[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
6767	8125172	NM_006709	EHMT2		euchromatic histone-lysine N-methyltransferase 2
6768	8179884	NM_006709	EHMT2		euchromatic histone-lysine N-methyltransferase 2

Fetching correlation data, please wait...
Getting list of correlations for id 6767.
Getting list of p-values for id 6767.
1 of 2 done.
Getting list of correlations for id 6768.
Getting list of p-values for id 6768.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.139 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8125172	8179884	NM_006709	EHMT2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8179884	8125172	NM_006709	EHMT2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8125172	8079563	NM_138615	DHX30	0.680783	1.352312e-15	4.686303e-11	1.562101e-11
4	8179884	8079563	NM_138615	DHX30	0.680783	1.352312e-15	4.686303e-11	1.171576e-11
5	8179884	8040753	NM_017727	TMEM214	0.656771	2.794844e-14	9.685253e-10	1.937051e-10
6	8125172	8040753	NM_017727	TMEM214	0.656771	2.794844e-14	9.685253e-10	1.614209e-10
7	8179884	8125638	NM_021976	RXRB	0.637370	2.661734e-13	9.223973e-9	1.317710e-9
8	8125172	8125638	NM_021976	RXRB	0.637370	2.661734e-13	9.223973e-9	1.152997e-9
9	8125172	8043725	NM_001079	ZAP70	0.635654	3.224254e-13	1.117333e-8	1.241481e-9
10	8179884	8043725	NM_001079	ZAP70	0.635654	3.224254e-13	1.117333e-8	1.117333e-9
11	8179884	7968890	NM_003646	DGKZ	0.629599	6.282179e-13	2.177026e-8	1.979115e-9
12	8125172	7968890	NM_003646	DGKZ	0.629599	6.282179e-13	2.177026e-8	1.814189e-9
13	8179884	8019263	NM_004309	ARHGDIA	0.625902	9.372760e-13	3.248036e-8	2.498489e-9
14	8125172	8019263	NM_004309	ARHGDIA	0.625902	9.372760e-13	3.248036e-8	2.320026e-9
15	8125172	7992021	NM_005861	STUB1	0.623454	1.218046e-12	4.221018e-8	2.814012e-9
16	8179884	7992021	NM_005861	STUB1	0.623454	1.218046e-12	4.221018e-8	2.638136e-9
17	8125172	7941136	NM_013265	C11orf2	0.621433	1.509593e-12	5.231345e-8	3.077262e-9
18	8179884	7941136	NM_013265	C11orf2	0.621433	1.509593e-12	5.231345e-8	2.906303e-9
19	8179884	8141425	NM_005641	TAF6	0.618267	2.106498e-12	7.299860e-8	3.842031e-9
20	8125172	8141425	NM_005641	TAF6	0.618267	2.106498e-12	7.299860e-8	3.649930e-9
21	8179884	8138067	NM_004227	CYTH3	0.611331	4.314154e-12	1.495027e-7	7.119176e-9
22	8125172	8138067	NM_004227	CYTH3	0.611331	4.314154e-12	1.495027e-7	6.795578e-9
23	8179884	8025788	NM_001128849	SMARCA4	0.608642	5.669911e-12	1.964851e-7	8.542830e-9
24	8125172	8025788	NM_001128849	SMARCA4	0.608642	5.669911e-12	1.964851e-7	8.186879e-9
25	8179884	7967202	NM_019034	RHOF	0.606985	6.700916e-12	2.322135e-7	9.288541e-9
26	8125172	7967202	NM_019034	RHOF	0.606985	6.700916e-12	2.322135e-7	8.931290e-9
27	8179884	8006788	NM_005937	MLLT6	0.606625	6.947682e-12	2.407650e-7	8.917221e-9
28	8125172	8006788	NM_005937	MLLT6	0.606625	6.947682e-12	2.407650e-7	8.598749e-9
29	8179884	8178903	NM_021976	RXRB	0.604863	8.288823e-12	2.872409e-7	9.904858e-9
30	8125172	8178903	NM_021976	RXRB	0.604863	8.288823e-12	2.872409e-7	9.574696e-9
31	8179884	8024170	NM_012292	HMHA1	0.603174	9.805740e-12	3.398081e-7	1.096155e-8
32	8125172	8024170	NM_012292	HMHA1	0.603174	9.805740e-12	3.398081e-7	1.061900e-8
33	8179884	8025895	NM_002743	PRKCSH	0.598804	1.507890e-11	5.225443e-7	1.583467e-8
34	8125172	8025895	NM_002743	PRKCSH	0.598804	1.507890e-11	5.225443e-7	1.536895e-8
35	8179884	8005171	NM_016113	TRPV2	0.596191	1.944462e-11	6.738340e-7	1.925240e-8
36	8125172	8005171	NM_016113	TRPV2	0.596191	1.944462e-11	6.738340e-7	1.871761e-8
37	8179884	8180111	NM_021976	RXRB	0.595552	2.068511e-11	7.168217e-7	1.937356e-8
38	8125172	8180111	NM_021976	RXRB	0.595552	2.068511e-11	7.168217e-7	1.886373e-8
39	8125172	8137874	NM_032415	CARD11	0.594199	2.356728e-11	8.167005e-7	2.094104e-8
40	8179884	8137874	NM_032415	CARD11	0.594199	2.356728e-11	8.167005e-7	2.041751e-8
41	8179884	8011516	NM_174954	ATP2A3	0.592226	2.847601e-11	9.868078e-7	2.406848e-8
42	8125172	8011516	NM_174954	ATP2A3	0.592226	2.847601e-11	9.868078e-7	2.349542e-8
43	8125172	8076137	NM_015374	SUN2	0.591842	2.954011e-11	1.023683e-6	2.380658e-8
44	8179884	8076137	NM_015374	SUN2	0.591842	2.954011e-11	1.023683e-6	2.326552e-8
45	8179884	8134821	NM_019606	MEPCE	0.590821	3.255611e-11	1.128199e-6	2.507109e-8
46	8125172	8134821	NM_019606	MEPCE	0.590821	3.255611e-11	1.128199e-6	2.452607e-8
47	8125172	8064336	NM_144628	TBC1D20	0.590547	3.341710e-11	1.158036e-6	2.463907e-8
48	8179884	8064336	NM_144628	TBC1D20	0.590547	3.341710e-11	1.158036e-6	2.412576e-8
49	8125172	8032755	NM_015898	ZBTB7A	0.589673	3.630566e-11	1.258136e-6	2.567625e-8
50	8179884	8032755	NM_015898	ZBTB7A	0.589673	3.630566e-11	1.258136e-6	2.516272e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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