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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id Label1 AccNum GeneSym Info Gene Name
12204 8180111 NM_021976 RXRB link to infopage retinoid X receptor, beta
12549 8178903 NM_021976 RXRB link to infopage retinoid X receptor, beta
12552 8125638 NM_021976 RXRB link to infopage retinoid X receptor, beta

Fetching correlation data, please wait...
Getting list of correlations for id 12204.
Getting list of p-values for id 12204.
1 of 3 done.
Getting list of correlations for id 12549.
Getting list of p-values for id 12549.
2 of 3 done.
Getting list of correlations for id 12552.
Getting list of p-values for id 12552.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.198 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8180111 8178903 NM_021976 RXRB link to infopage 0.985786 1.287245e-81 6.691227e-77 6.691227e-77
2 8178903 8180111 NM_021976 RXRB link to infopage 0.985786 1.287245e-81 6.691227e-77 3.345613e-77
3 8178903 8125638 NM_021976 RXRB link to infopage 0.957919 1.204637e-57 6.261823e-53 2.087274e-53
4 8125638 8178903 NM_021976 RXRB link to infopage 0.957919 1.204637e-57 6.261823e-53 1.565456e-53
5 8180111 8125638 NM_021976 RXRB link to infopage 0.946201 2.791792e-52 1.451201e-47 2.902403e-48
6 8125638 8180111 NM_021976 RXRB link to infopage 0.946201 2.791792e-52 1.451201e-47 2.418669e-48
7 8125638 8024170 NM_012292 HMHA1 link to infopage 0.753054 1.945451e-20 1.011265e-15 1.444664e-16
8 8125638 8032392 NM_199054 MKNK2 link to infopage 0.732547 6.632524e-19 3.447652e-14 4.309565e-15
9 8180111 7959314 NM_015048 SETD1B link to infopage 0.712104 1.642312e-17 8.536902e-13 9.485447e-14
10 8178903 7959314 NM_015048 SETD1B link to infopage 0.710875 1.974163e-17 1.026190e-12 1.026190e-13
11 8125638 8011516 NM_174954 ATP2A3 link to infopage 0.707972 3.037514e-17 1.578930e-12 1.435391e-13
12 8180111 8093624 NM_001145856 SH3BP2 link to infopage 0.697472 1.383305e-16 7.190560e-12 5.992133e-13
13 8180111 8032392 NM_199054 MKNK2 link to infopage 0.695895 1.727320e-16 8.978783e-12 6.906756e-13
14 8178903 8032392 NM_199054 MKNK2 link to infopage 0.694033 2.240964e-16 1.164875e-11 8.320538e-13
15 8178903 8093624 NM_001145856 SH3BP2 link to infopage 0.692633 2.722011e-16 1.414928e-11 9.432856e-13
16 8180111 7998119 NR_024540 WASH7P link to infopage 0.684663 8.067489e-16 4.193561e-11 2.620976e-12
17 8125638 7959314 NM_015048 SETD1B link to infopage 0.682241 1.114768e-15 5.794675e-11 3.408632e-12
18 8125638 8032137 NM_001033026 C19orf6 link to infopage 0.674825 2.943798e-15 1.530216e-10 8.501197e-12
19 8125638 8093624 NM_001145856 SH3BP2 link to infopage 0.674809 2.949884e-15 1.533379e-10 8.070417e-12
20 8178903 7998119 NR_024540 WASH7P link to infopage 0.673405 3.534357e-15 1.837194e-10 9.185970e-12
21 8180111 8027805 NM_003367 USF2 link to infopage 0.672907 3.767347e-15 1.958305e-10 9.325260e-12
22 8125638 7998119 NR_024540 WASH7P link to infopage 0.671377 4.580344e-15 2.380909e-10 1.082231e-11
23 8125638 7949264 NM_006795 EHD1 link to infopage 0.670669 5.011281e-15 2.604914e-10 1.132571e-11
24 8125638 7905382 NM_020832 ZNF687 link to infopage 0.663841 1.179283e-14 6.130031e-10 2.554180e-11
25 8178903 8024170 NM_012292 HMHA1 link to infopage 0.663022 1.304829e-14 6.782634e-10 2.713054e-11
26 8178903 8027805 NM_003367 USF2 link to infopage 0.661719 1.531554e-14 7.961173e-10 3.061990e-11
27 8180111 8024170 NM_012292 HMHA1 link to infopage 0.661504 1.572591e-14 8.174484e-10 3.027587e-11
28 8125638 8029147 NM_199002 ARHGEF1 link to infopage 0.659874 1.919188e-14 9.976133e-10 3.562905e-11
29 8125638 8003348 NM_178841 RNF166 link to infopage 0.659577 1.989967e-14 1.034405e-9 3.566913e-11
30 8125638 8178790 NM_022107 GPSM3 link to infopage 0.656785 2.790086e-14 1.450315e-9 4.834382e-11
31 8125638 8027805 NM_003367 USF2 link to infopage 0.656585 2.857946e-14 1.485589e-9 4.792223e-11
32 8178903 7897068 NM_003036 SKI link to infopage 0.653923 3.930969e-14 2.043357e-9 6.385491e-11
33 8125638 7923233 NM_017596 KIF21B link to infopage 0.653810 3.984161e-14 2.071007e-9 6.275778e-11
34 8178903 8074003 NM_025204 TRABD link to infopage 0.648241 7.680893e-14 3.992605e-9 1.174296e-10
35 8178903 8141595 NM_022574 GIGYF1 link to infopage 0.648211 7.707293e-14 4.006328e-9 1.144665e-10
36 8178903 8178790 NM_022107 GPSM3 link to infopage 0.646911 8.966388e-14 4.660818e-9 1.294672e-10
37 8180111 8029147 NM_199002 ARHGEF1 link to infopage 0.645108 1.104473e-13 5.741161e-9 1.551665e-10
38 8180111 8011516 NM_174954 ATP2A3 link to infopage 0.644840 1.139179e-13 5.921567e-9 1.558307e-10
39 8180111 8141595 NM_022574 GIGYF1 link to infopage 0.643458 1.335254e-13 6.940782e-9 1.779688e-10
40 8178903 7949172 NM_004579 MAP4K2 link to infopage 0.643280 1.362740e-13 7.083658e-9 1.770914e-10
41 8180111 8074003 NM_025204 TRABD link to infopage 0.642989 1.408842e-13 7.323300e-9 1.786171e-10
42 8180111 7959957 NM_003565 ULK1 link to infopage 0.641174 1.732700e-13 9.006748e-9 2.144464e-10
43 8180111 7949172 NM_004579 MAP4K2 link to infopage 0.641099 1.747542e-13 9.083897e-9 2.112534e-10
44 8178903 8011516 NM_174954 ATP2A3 link to infopage 0.641066 1.754163e-13 9.118313e-9 2.072344e-10
45 8180111 8175900 NM_001666 ARHGAP4 link to infopage 0.640521 1.866158e-13 9.700476e-9 2.155661e-10
46 8125638 8086754 NM_012235 SCAP link to infopage 0.639302 2.141864e-13 1.113362e-8 2.420353e-10
47 8125638 8018449 NM_199242 UNC13D link to infopage 0.639221 2.161706e-13 1.123676e-8 2.390801e-10
48 8180111 8178790 NM_022107 GPSM3 link to infopage 0.639214 2.163270e-13 1.124489e-8 2.342686e-10
49 8125638 8032755 NM_015898 ZBTB7A link to infopage 0.639117 2.187176e-13 1.136916e-8 2.320236e-10
50 8178903 7959957 NM_003565 ULK1 link to infopage 0.638618 2.313554e-13 1.202609e-8 2.405217e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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