[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
14787	8125373	NM_022107	GPSM3		G-protein signaling modulator 3
14788	8179987	NM_022107	GPSM3		G-protein signaling modulator 3
15652	8178790	NM_022107	GPSM3		G-protein signaling modulator 3

Fetching correlation data, please wait...
Getting list of correlations for id 14787.
Getting list of p-values for id 14787.
1 of 3 done.
Getting list of correlations for id 14788.
Getting list of p-values for id 14788.
2 of 3 done.
Getting list of correlations for id 15652.
Getting list of p-values for id 15652.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.183 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8179987	8125373	NM_022107	GPSM3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8125373	8179987	NM_022107	GPSM3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8178790	8125373	NM_022107	GPSM3	0.925868	2.460010e-45	1.278738e-40	4.262459e-41
4	8125373	8178790	NM_022107	GPSM3	0.925868	2.460010e-45	1.278738e-40	3.196844e-41
5	8179987	8178790	NM_022107	GPSM3	0.925868	2.460010e-45	1.278738e-40	2.557475e-41
6	8178790	8179987	NM_022107	GPSM3	0.925868	2.460010e-45	1.278738e-40	2.131229e-41
7	8178790	8032392	NM_199054	MKNK2	0.791292	9.727312e-24	5.056354e-19	7.223363e-20
8	8125373	7949172	NM_004579	MAP4K2	0.786456	2.769981e-23	1.439864e-18	1.799830e-19
9	8179987	7949172	NM_004579	MAP4K2	0.786456	2.769981e-23	1.439864e-18	1.599849e-19
10	8178790	8141526	NM_030935	TSC22D4	0.779307	1.239286e-22	6.441930e-18	6.441930e-19
11	8179987	8110327	NM_006480	RGS14	0.774849	3.067130e-22	1.594325e-17	1.449386e-18
12	8125373	8110327	NM_006480	RGS14	0.774849	3.067130e-22	1.594325e-17	1.328604e-18
13	8178790	7949172	NM_004579	MAP4K2	0.767181	1.390404e-21	7.227459e-17	5.559584e-18
14	8178790	8110327	NM_006480	RGS14	0.762375	3.482633e-21	1.810308e-16	1.293077e-17
15	8178790	7914021	NM_003047	SLC9A1	0.749435	3.717231e-20	1.932254e-15	1.288169e-16
16	8178790	8124798	NM_133471	KIAA1949	0.744933	8.191740e-20	4.258148e-15	2.661343e-16
17	8178790	7959957	NM_003565	ULK1	0.734697	4.651693e-19	2.417996e-14	1.422351e-15
18	8125373	7914021	NM_003047	SLC9A1	0.728362	1.309893e-18	6.808955e-14	3.782753e-15
19	8179987	7914021	NM_003047	SLC9A1	0.728362	1.309893e-18	6.808955e-14	3.583661e-15
20	8125373	8032392	NM_199054	MKNK2	0.726895	1.657801e-18	8.617413e-14	4.308707e-15
21	8179987	8032392	NM_199054	MKNK2	0.726895	1.657801e-18	8.617413e-14	4.103530e-15
22	8179987	8115927	NM_014901	RNF44	0.725449	2.088081e-18	1.085405e-13	4.933661e-15
23	8125373	8115927	NM_014901	RNF44	0.725449	2.088081e-18	1.085405e-13	4.719154e-15
24	8178790	8167334	NM_000377	WAS	0.721648	3.803095e-18	1.976887e-13	8.237028e-15
25	8178790	7947861	NM_001080547	SPI1	0.716916	7.914269e-18	4.113916e-13	1.645566e-14
26	8178790	8115927	NM_014901	RNF44	0.715417	9.950601e-18	5.172422e-13	1.989393e-14
27	8178790	8156476	NM_005392	PHF2	0.714456	1.151503e-17	5.985626e-13	2.216899e-14
28	8125373	8141526	NM_030935	TSC22D4	0.713726	1.286212e-17	6.685859e-13	2.387807e-14
29	8179987	8141526	NM_030935	TSC22D4	0.713726	1.286212e-17	6.685859e-13	2.305469e-14
30	8178790	8076241	NM_020831	MKL1	0.713445	1.341846e-17	6.975048e-13	2.325016e-14
31	8178790	8049689	NM_018226	RNPEPL1	0.712905	1.455701e-17	7.566881e-13	2.440929e-14
32	8178790	8016215	NM_199282	ARHGAP27	0.709639	2.373097e-17	1.233560e-12	3.854874e-14
33	8125373	8124798	NM_133471	KIAA1949	0.708449	2.830910e-17	1.471535e-12	4.459198e-14
34	8179987	8124798	NM_133471	KIAA1949	0.708449	2.830910e-17	1.471535e-12	4.328045e-14
35	8125373	8037816	NM_013403	STRN4	0.708082	2.988845e-17	1.553631e-12	4.438947e-14
36	8179987	8037816	NM_013403	STRN4	0.708082	2.988845e-17	1.553631e-12	4.315643e-14
37	8125373	8049689	NM_018226	RNPEPL1	0.707901	3.069577e-17	1.595597e-12	4.312423e-14
38	8179987	8049689	NM_018226	RNPEPL1	0.707901	3.069577e-17	1.595597e-12	4.198939e-14
39	8178790	7941537	NM_018026	PACS1	0.705337	4.471988e-17	2.324584e-12	5.960473e-14
40	8125373	8016215	NM_199282	ARHGAP27	0.701865	7.395846e-17	3.844435e-12	9.611087e-14
41	8179987	8016215	NM_199282	ARHGAP27	0.701865	7.395846e-17	3.844435e-12	9.376670e-14
42	8125373	7947861	NM_001080547	SPI1	0.700933	8.454302e-17	4.394631e-12	1.046341e-13
43	8179987	7947861	NM_001080547	SPI1	0.700933	8.454302e-17	4.394631e-12	1.022007e-13
44	8178790	8037794	NM_016457	PRKD2	0.700284	9.277476e-17	4.822525e-12	1.096028e-13
45	8178790	8015914	NM_005474	HDAC5	0.697154	1.446988e-16	7.521589e-12	1.671464e-13
46	8178790	8004671	NM_001080424	KDM6B	0.696899	1.499972e-16	7.797006e-12	1.695001e-13
47	8178790	7942342	NM_001567	INPPL1	0.696419	1.604788e-16	8.341850e-12	1.774862e-13
48	8178790	8016628	NM_032595	PPP1R9B	0.696210	1.652593e-16	8.590342e-12	1.789655e-13
49	8178790	8037816	NM_013403	STRN4	0.696167	1.662579e-16	8.642252e-12	1.763725e-13
50	8178790	7967002	NM_001080855	PXN	0.694798	2.014234e-16	1.047019e-11	2.094038e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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