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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 14787.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
14787 8125373 NM_022107 GPSM3 link to infopage G-protein signaling modulator 3

Fetching correlation data, please wait...
Getting list of correlations for id 14787.
Getting list of p-values for id 14787.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.069 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8125373 8179987 NM_022107 GPSM3 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 8125373 8178790 NM_022107 GPSM3 link to infopage 0.925868 2.460010e-45 4.262459e-41 2.131229e-41
3 8125373 7949172 NM_004579 MAP4K2 link to infopage 0.786456 2.769981e-23 4.799546e-19 1.599849e-19
4 8125373 8110327 NM_006480 RGS14 link to infopage 0.774849 3.067130e-22 5.314416e-18 1.328604e-18
5 8125373 7914021 NM_003047 SLC9A1 link to infopage 0.728362 1.309893e-18 2.269652e-14 4.539304e-15
6 8125373 8032392 NM_199054 MKNK2 link to infopage 0.726895 1.657801e-18 2.872471e-14 4.787452e-15
7 8125373 8115927 NM_014901 RNF44 link to infopage 0.725449 2.088081e-18 3.618018e-14 5.168597e-15
8 8125373 8141526 NM_030935 TSC22D4 link to infopage 0.713726 1.286212e-17 2.228620e-13 2.785775e-14
9 8125373 8124798 NM_133471 KIAA1949 link to infopage 0.708449 2.830910e-17 4.905118e-13 5.450131e-14
10 8125373 8037816 NM_013403 STRN4 link to infopage 0.708082 2.988845e-17 5.178771e-13 5.178771e-14
11 8125373 8049689 NM_018226 RNPEPL1 link to infopage 0.707901 3.069577e-17 5.318656e-13 4.835141e-14
12 8125373 8016215 NM_199282 ARHGAP27 link to infopage 0.701865 7.395846e-17 1.281478e-12 1.067899e-13
13 8125373 7947861 NM_001080547 SPI1 link to infopage 0.700933 8.454302e-17 1.464877e-12 1.126828e-13
14 8125373 8167334 NM_000377 WAS link to infopage 0.691008 3.407078e-16 5.903444e-12 4.216746e-13
15 8125373 7959957 NM_003565 ULK1 link to infopage 0.678930 1.725797e-15 2.990288e-11 1.993525e-12
16 8125373 8156476 NM_005392 PHF2 link to infopage 0.675342 2.753583e-15 4.771134e-11 2.981959e-12
17 8125373 8093624 NM_001145856 SH3BP2 link to infopage 0.673907 3.313507e-15 5.741314e-11 3.377244e-12
18 8125373 8015914 NM_005474 HDAC5 link to infopage 0.673250 3.605102e-15 6.246561e-11 3.470312e-12
19 8125373 7942342 NM_001567 INPPL1 link to infopage 0.670906 4.862695e-15 8.425591e-11 4.434522e-12
20 8125373 8031122 NM_014516 CNOT3 link to infopage 0.669661 5.694760e-15 9.867311e-11 4.933656e-12
21 8125373 8074003 NM_025204 TRABD link to infopage 0.667908 7.103042e-15 1.230744e-10 5.860686e-12
22 8125373 7994874 NM_001105079 FBRS link to infopage 0.666689 8.275822e-15 1.433952e-10 6.517962e-12
23 8125373 7899043 NM_020451 SEPN1 link to infopage 0.665621 9.455062e-15 1.638279e-10 7.122951e-12
24 8125373 8048304 NM_021198 CTDSP1 link to infopage 0.664373 1.104159e-14 1.913176e-10 7.971567e-12
25 8125373 8016628 NM_032595 PPP1R9B link to infopage 0.663730 1.195497e-14 2.071438e-10 8.285751e-12
26 8125373 8060705 NM_020746 MAVS link to infopage 0.663274 1.264775e-14 2.191476e-10 8.428754e-12
27 8125373 7941537 NM_018026 PACS1 link to infopage 0.659522 2.003161e-14 3.470878e-10 1.285510e-11
28 8125373 8029193 NM_015125 CIC link to infopage 0.656844 2.770194e-14 4.799916e-10 1.714256e-11
29 8125373 7984952 NM_015492 C15orf39 link to infopage 0.653810 3.984015e-14 6.903104e-10 2.380381e-11
30 8125373 8029710 NM_003370 VASP link to infopage 0.651467 5.259957e-14 9.113928e-10 3.037976e-11
31 8125373 8039316 NM_017607 PPP1R12C link to infopage 0.649685 6.487365e-14 1.124066e-9 3.626019e-11
32 8125373 7959314 NM_015048 SETD1B link to infopage 0.647177 8.693590e-14 1.506338e-9 4.707308e-11
33 8125373 8026830 NM_015122 FCHO1 link to infopage 0.646232 9.700135e-14 1.680742e-9 5.093159e-11
34 8125373 7898161 NM_024329 EFHD2 link to infopage 0.646148 9.795202e-14 1.697215e-9 4.991808e-11
35 8125373 8136918 NM_003461 ZYX link to infopage 0.646011 9.952012e-14 1.724385e-9 4.926815e-11
36 8125373 7996571 NM_024519 FAM65A link to infopage 0.643837 1.278407e-13 2.215096e-9 6.153044e-11
37 8125373 8177744 NM_021959 PPP1R11 link to infopage 0.643147 1.383577e-13 2.397324e-9 6.479255e-11
38 8125373 8117834 NM_021959 PPP1R11 link to infopage 0.643147 1.383577e-13 2.397324e-9 6.308748e-11
39 8125373 8137225 NM_013400 REPIN1 link to infopage 0.642239 1.534922e-13 2.659559e-9 6.819383e-11
40 8125373 8027956 NM_014727 MLL4 link to infopage 0.641895 1.596311e-13 2.765928e-9 6.914820e-11
41 8125373 7949465 NM_021975 RELA link to infopage 0.638904 2.240215e-13 3.881621e-9 9.467368e-11
42 8125373 8076241 NM_020831 MKL1 link to infopage 0.637581 2.599554e-13 4.504247e-9 1.072440e-10
43 8125373 8035445 NM_005354 JUND link to infopage 0.636549 2.917975e-13 5.055976e-9 1.175808e-10
44 8125373 8164252 NM_170600 SH2D3C link to infopage 0.634486 3.670957e-13 6.360668e-9 1.445606e-10
45 8125373 8017393 NM_030576 LIMD2 link to infopage 0.634073 3.843023e-13 6.658806e-9 1.479735e-10
46 8125373 7956470 NM_052897 MBD6 link to infopage 0.631060 5.355372e-13 9.279252e-9 2.017229e-10
47 8125373 8012197 NM_020360 PLSCR3 link to infopage 0.630981 5.401980e-13 9.360011e-9 1.991492e-10
48 8125373 7962659 NM_015401 HDAC7 link to infopage 0.629697 6.215353e-13 1.076934e-8 2.243613e-10
49 8125373 8026564 NM_016270 KLF2 link to infopage 0.629260 6.517779e-13 1.129336e-8 2.304766e-10
50 8125373 8003171 NM_021149 COTL1 link to infopage 0.627749 7.679459e-13 1.330620e-8 2.661240e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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