[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1866	8175319	NM_007131	ZNF75D		zinc finger protein 75D

Fetching correlation data, please wait...
Getting list of correlations for id 1866.
Getting list of p-values for id 1866.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.126 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8175319	7904997	NM_001143883	PPIAL4B	0.546754	1.599058e-9	2.770689e-5	2.770689e-5
2	8175319	7905016	NM_001143883	PPIAL4B	0.546754	1.599058e-9	2.770689e-5	1.385344e-5
3	8175319	8109821	NM_006013	RPL10	0.546232	1.668902e-9	2.891707e-5	9.639022e-6
4	8175319	7904086	NM_014813	LRIG2	0.537577	3.357450e-9	5.817454e-5	1.454363e-5
5	8175319	7950195	hsa-mir-139		-0.535510	3.955981e-9	6.854529e-5	1.370906e-5
6	8175319	7925500	NM_001821	CHML	0.533450	4.653446e-9	8.063026e-5	1.343838e-5
7	8175319	7942697	NM_004055	CAPN5	-0.529705	6.233972e-9	1.080160e-4	1.543086e-5
8	8175319	8010590	NM_001080519	BAHCC1	-0.524417	9.364760e-9	1.622632e-4	2.028290e-5
9	8175319	8098758	NM_133474	ZNF721	0.523962	9.695277e-9	1.679901e-4	1.866556e-5
10	8175319	7956658	NM_004731	SLC16A7	0.523696	9.893511e-9	1.714249e-4	1.714249e-5
11	8175319	8156167	NM_024635	NAA35	0.523659	9.921553e-9	1.719108e-4	1.562825e-5
12	8175319	7934870	NM_032810	ATAD1	0.521142	1.200688e-8	2.080432e-4	1.733694e-5
13	8175319	8039577	NM_024303	ZSCAN5A	-0.516337	1.720837e-8	2.981694e-4	2.293611e-5
14	8175319	7903183	ENST00000415278		0.515816	1.788802e-8	3.099458e-4	2.213899e-5
15	8175319	8051204	NM_014860	SUPT7L	0.512551	2.276196e-8	3.943965e-4	2.629310e-5
16	8175319	7983843	NM_207036	TCF12	0.510789	2.589758e-8	4.487273e-4	2.804546e-5
17	8175319	7919436	NM_178230	PPIAL4A	0.509133	2.921643e-8	5.062331e-4	2.977841e-5
18	8175319	8097256	NM_002006	FGF2	-0.505951	3.676845e-8	6.370869e-4	3.539372e-5
19	8175319	8081564	NM_198196	CD96	0.505681	3.748869e-8	6.495665e-4	3.418771e-5
20	8175319	8101099	NM_018115	SDAD1	0.505480	3.803360e-8	6.590081e-4	3.295041e-5
21	8175319	7926356	NM_001001484	PTER	0.502510	4.702310e-8	8.147693e-4	3.879854e-5
22	8175319	7957242	NM_001136262	ATXN7L3B	0.501912	4.906557e-8	8.501591e-4	3.864360e-5
23	8175319	8156846	ENST00000409686		-0.501252	5.141422e-8	8.908541e-4	3.873279e-5
24	8175319	8058614	NM_006055	LANCL1	0.499902	5.655870e-8	9.799926e-4	4.083302e-5
25	8175319	7989347	NM_024611	NARG2	0.498901	6.069062e-8	1.051586e-3	4.206346e-5
26	8175319	7943124			-0.498810	6.107880e-8	1.058312e-3	4.070432e-5
27	8175319	8105353	NM_015360	SKIV2L2	0.498504	6.240721e-8	1.081330e-3	4.004925e-5
28	8175319	8038962	NM_001102657	ZNF836	0.498326	6.319045e-8	1.094901e-3	3.910361e-5
29	8175319	8113023	NM_153354	TMEM161B	0.498191	6.379381e-8	1.105355e-3	3.811570e-5
30	8175319	7950544	NM_004705	PRKRIR	0.497884	6.518073e-8	1.129386e-3	3.764622e-5
31	8175319	8131195	NM_133463	AMZ1	-0.497772	6.569045e-8	1.138218e-3	3.671672e-5
32	8175319	7974146	NM_017922	PRPF39	0.496487	7.186315e-8	1.245173e-3	3.891165e-5
33	8175319	7900944	NM_152499	CCDC24	-0.495323	7.793264e-8	1.350339e-3	4.091936e-5
34	8175319	8079005	NM_198484	ZNF621	0.493661	8.744702e-8	1.515194e-3	4.456454e-5
35	8175319	8105545	NM_016338	IPO11	0.491481	1.016102e-7	1.760600e-3	5.030285e-5
36	8175319	8137240	NM_153236	GIMAP7	0.491099	1.043094e-7	1.807368e-3	5.020467e-5
37	8175319	8027241	NM_021047	ZNF253	0.490322	1.100115e-7	1.906169e-3	5.151808e-5
38	8175319	8047174	NM_001127257	SLC39A10	0.490129	1.114714e-7	1.931465e-3	5.082803e-5
39	8175319	8119993	NM_007355	HSP90AB1	0.489167	1.190365e-7	2.062546e-3	5.288579e-5
40	8175319	8030946	NM_001039886	ZNF808	0.488807	1.219899e-7	2.113718e-3	5.284296e-5
41	8175319	8051622	NM_001031684	SRSF7	0.488742	1.225240e-7	2.122974e-3	5.177985e-5
42	8175319	7968835	NM_016248	AKAP11	0.488704	1.228412e-7	2.128469e-3	5.067784e-5
43	8175319	8066590	NM_003279	TNNC2	-0.488241	1.267717e-7	2.196573e-3	5.108310e-5
44	8175319	7969677	NM_144778	MBNL2	0.488192	1.271948e-7	2.203905e-3	5.008874e-5
45	8175319	7902594	NM_182948	PRKACB	0.487964	1.291828e-7	2.238350e-3	4.974112e-5
46	8175319	7930663	NM_198496	VWA2	-0.487693	1.315735e-7	2.279773e-3	4.956029e-5
47	8175319	7956743	NM_001034996	RPL14	0.487496	1.333477e-7	2.310515e-3	4.915990e-5
48	8175319	8132118	NM_198098	AQP1	-0.486964	1.382401e-7	2.395287e-3	4.990181e-5
49	8175319	7905051	NM_001143883	PPIAL4B	0.486792	1.398585e-7	2.423328e-3	4.945568e-5
50	8175319	7919162	NM_001143883	PPIAL4B	0.486792	1.398585e-7	2.423328e-3	4.846657e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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