[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3749	7916282	NM_004631	LRP8		low density lipoprotein receptor-related protein 8, apolipoprotein e receptor

Fetching correlation data, please wait...
Getting list of correlations for id 3749.
Getting list of p-values for id 3749.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.115 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7916282	8124551	NR_002936	LOC222699	0.546562	1.624448e-9	2.814681e-5	2.814681e-5
2	7916282	7942315	NM_001145309	LRTOMT	0.509316	2.883096e-8	4.995540e-4	2.497770e-4
3	7916282	8162216	NM_016848	SHC3	0.494020	8.530072e-8	1.478006e-3	4.926685e-4
4	7916282	8066641	NM_022095	ZNF335	0.487941	1.293866e-7	2.241882e-3	5.604705e-4
5	7916282	7922095	NR_026550	BRP44	-0.476561	2.762376e-7	4.786370e-3	9.572739e-4
6	7916282	8040456	NM_001105569	MSGN1	0.471552	3.824239e-7	6.626258e-3	1.104376e-3
7	7916282	7991779	NM_032039	ITFG3	0.469606	4.333423e-7	7.508522e-3	1.072646e-3
8	7916282	7911862	NM_020710	LRRC47	0.467925	4.824610e-7	8.359602e-3	1.044950e-3
9	7916282	8116867	NM_030969	TMEM14B	-0.466268	5.359838e-7	9.286991e-3	1.031888e-3
10	7916282	8153920	NM_021061	ZNF250	0.466118	5.411084e-7	9.375785e-3	9.375785e-4
11	7916282	8170364	NM_002025	AFF2	0.465492	5.629840e-7	9.754825e-3	8.868022e-4
12	7916282	7952813	NM_014987	IGSF9B	0.462272	6.893143e-7	1.194375e-2	9.953124e-4
13	7916282	7938076	NM_001005178	OR52W1	0.455918	1.021618e-6	1.770157e-2	1.361659e-3
14	7916282	8179167	NM_001161376	C6orf136	0.450940	1.382897e-6	2.396145e-2	1.711532e-3
15	7916282	8177851	NM_001161376	C6orf136	0.450940	1.382897e-6	2.396145e-2	1.597430e-3
16	7916282	8145122	NM_001128431	SLC39A14	0.446271	1.829114e-6	3.169305e-2	1.980816e-3
17	7916282	8166398	NM_206923	YY2	0.444915	1.982309e-6	3.434746e-2	2.020439e-3
18	7916282	8042530	ENST00000447764		0.442717	2.256754e-6	3.910278e-2	2.172376e-3
19	7916282	7969472	ENST00000318245		0.440402	2.584459e-6	4.478093e-2	2.356891e-3
20	7916282	7981752	NR_027407	GOLGA8DP	0.437111	3.128674e-6	5.421053e-2	2.710526e-3
21	7916282	8071516	NM_004327	BCR	0.433885	3.765767e-6	6.524944e-2	3.107116e-3
22	7916282	7991695	NR_027407	GOLGA8DP	0.430706	4.511912e-6	7.817790e-2	3.553541e-3
23	7916282	7939805	NM_001128225	SLC39A13	0.430242	4.631964e-6	8.025804e-2	3.489480e-3
24	7916282	7910200	NM_053052	SNAP47	0.429589	4.805795e-6	8.327000e-2	3.469583e-3
25	7916282	7944418	NM_014807	C2CD2L	0.427672	5.352803e-6	9.274802e-2	3.709921e-3
26	7916282	8139656	NM_001001555	GRB10	0.426617	5.678104e-6	9.838450e-2	3.784019e-3
27	7916282	8075016	NM_207644	C22orf36	0.425853	5.925572e-6	1.026724e-1	3.802681e-3
28	7916282	7986642	NR_027407	GOLGA8DP	0.425581	6.016042e-6	1.042400e-1	3.722855e-3
29	7916282	7907049	ENST00000363166		0.423534	6.739699e-6	1.167788e-1	4.026854e-3
30	7916282	7911993	NM_012405	ICMT	0.423341	6.811804e-6	1.180281e-1	3.934271e-3
31	7916282	8084219	NM_017644	KLHL24	-0.423091	6.906794e-6	1.196740e-1	3.860452e-3
32	7916282	7913249	NM_032409	PINK1	0.418119	9.069685e-6	1.571504e-1	4.910951e-3
33	7916282	8170322	NM_013275	ANKRD11	0.414486	1.103745e-5	1.912458e-1	5.795328e-3
34	7916282	7997907	NM_013275	ANKRD11	0.414486	1.103745e-5	1.912458e-1	5.624877e-3
35	7916282	7898673	ENST00000419581		0.414088	1.127608e-5	1.953806e-1	5.582302e-3
36	7916282	8093936	NM_033296	MRFAP1	-0.414003	1.132747e-5	1.962711e-1	5.451974e-3
37	7916282	7999591	NR_023387	ABCC6P2	0.413726	1.149722e-5	1.992124e-1	5.384119e-3
38	7916282	8086317	NM_031899	GORASP1	0.413023	1.193847e-5	2.068579e-1	5.443628e-3
39	7916282	8039680	NM_024833	ZNF671	-0.412664	1.216989e-5	2.108677e-1	5.406863e-3
40	7916282	8027049	NM_018316	KLHL26	0.412513	1.226824e-5	2.125717e-1	5.314293e-3
41	7916282	7920337	NM_023015	INTS3	0.412298	1.240955e-5	2.150203e-1	5.244397e-3
42	7916282	8160935	NM_004629	FANCG	0.411391	1.302467e-5	2.256784e-1	5.373295e-3
43	7916282	8138128	NM_015622	CCZ1	-0.410417	1.371644e-5	2.376648e-1	5.527088e-3
44	7916282	7970262	NM_001008895	CUL4A	-0.409131	1.468206e-5	2.543960e-1	5.781727e-3
45	7916282	8164995	NM_007371	BRD3	0.408389	1.526834e-5	2.645546e-1	5.878991e-3
46	7916282	8013860	NM_078471	MYO18A	0.407144	1.630160e-5	2.824578e-1	6.140387e-3
47	7916282	7977344	NM_001100913	PACS2	0.407105	1.633569e-5	2.830486e-1	6.022310e-3
48	7916282	8147756	NM_024812	BAALC	0.406441	1.691373e-5	2.930642e-1	6.105505e-3
49	7916282	8131000	NM_017802	HEATR2	0.405995	1.731358e-5	2.999924e-1	6.122294e-3
50	7916282	8097570	NM_032557	USP38	-0.405884	1.741456e-5	3.017421e-1	6.034841e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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