[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 2916.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2916	8177851	NM_001161376	C6orf136		chromosome 6 open reading frame 136

Fetching correlation data, please wait...
Getting list of correlations for id 2916.
Getting list of p-values for id 2916.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.096 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8177851	8179167	NM_001161376	C6orf136	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8177851	8117987	NM_001161376	C6orf136	0.917233	5.734846e-43	9.936768e-39	4.968384e-39
3	8177851	8011375	NM_080704	TRPV1	0.596812	1.830850e-11	3.172314e-7	1.057438e-7
4	8177851	7979367	NM_006544	EXOC5	-0.570285	2.147158e-10	3.720381e-6	9.300951e-7
5	8177851	8130720	NM_145169	SFT2D1	-0.565804	3.185675e-10	5.519820e-6	1.103964e-6
6	8177851	8114152	NM_006930	SKP1	-0.565251	3.343382e-10	5.793077e-6	9.655129e-7
7	8177851	8017162	NM_016125	RNFT1	-0.562605	4.207201e-10	7.289817e-6	1.041402e-6
8	8177851	8022882	NM_006965	ZNF24	-0.560219	5.166730e-10	8.952394e-6	1.119049e-6
9	8177851	7949206	NM_130802	MEN1	0.556322	7.202167e-10	1.247919e-5	1.386577e-6
10	8177851	8092201	NM_024665	TBL1XR1	-0.547258	1.534127e-9	2.658182e-5	2.658182e-6
11	8177851	8066641	NM_022095	ZNF335	0.547123	1.551232e-9	2.687820e-5	2.443473e-6
12	8177851	7937415	NM_020901	PHRF1	0.546277	1.662732e-9	2.881015e-5	2.400846e-6
13	8177851	8071516	NM_004327	BCR	0.545030	1.841290e-9	3.190403e-5	2.454156e-6
14	8177851	7919800	NM_004079	CTSS	-0.544948	1.853542e-9	3.211633e-5	2.294023e-6
15	8177851	8083656	NM_022736	MFSD1	-0.544105	1.985334e-9	3.439988e-5	2.293326e-6
16	8177851	7936578	NM_022063	C10orf84	-0.543300	2.119512e-9	3.672479e-5	2.295299e-6
17	8177851	7927799	ENST00000298249		-0.542098	2.336204e-9	4.047941e-5	2.381142e-6
18	8177851	8138640	NM_018947	CYCS	-0.541272	2.497216e-9	4.326926e-5	2.403848e-6
19	8177851	8030403	NM_020719	PRR12	0.540143	2.734735e-9	4.738476e-5	2.493935e-6
20	8177851	8169750	NM_001042750	STAG2	-0.539757	2.820773e-9	4.887554e-5	2.443777e-6
21	8177851	8148208	NM_144963	FAM91A1	-0.538754	3.056397e-9	5.295820e-5	2.521819e-6
22	8177851	8142307	NM_015723	PNPLA8	-0.538470	3.126730e-9	5.417685e-5	2.462584e-6
23	8177851	8052307	NM_001122964	SMEK2	-0.535160	4.066962e-9	7.046825e-5	3.063837e-6
24	8177851	8052680	NM_004161	RAB1A	-0.535105	4.084551e-9	7.077302e-5	2.948876e-6
25	8177851	7995448	NM_153261	TMEM188	-0.534769	4.194204e-9	7.267297e-5	2.906919e-6
26	8177851	8028656	NM_022835	PLEKHG2	0.534276	4.360481e-9	7.555406e-5	2.905925e-6
27	8177851	8084219	NM_017644	KLHL24	-0.533848	4.509963e-9	7.814412e-5	2.894227e-6
28	8177851	8119444	NM_001012426	FOXP4	0.531887	5.259541e-9	9.113207e-5	3.254717e-6
29	8177851	8091648	NM_007107	SSR3	-0.531258	5.524318e-9	9.571985e-5	3.300685e-6
30	8177851	8052024	NM_025133	FBXO11	-0.531045	5.617171e-9	9.732872e-5	3.244291e-6
31	8177851	7957186	NM_022771	TBC1D15	-0.530661	5.787441e-9	1.002790e-4	3.234806e-6
32	8177851	8092933	NM_012287	ACAP2	-0.527827	7.208749e-9	1.249060e-4	3.903313e-6
33	8177851	7965723	NM_015054	UHRF1BP1L	-0.527608	7.331739e-9	1.270370e-4	3.849607e-6
34	8177851	8041122	NM_002709	PPP1CB	-0.526892	7.747595e-9	1.342426e-4	3.948311e-6
35	8177851	7938592	NM_032228	FAR1	-0.526220	8.157828e-9	1.413507e-4	4.038591e-6
36	8177851	8150757	NM_014781	RB1CC1	-0.525407	8.682586e-9	1.504432e-4	4.178977e-6
37	8177851	7903703	NM_006496	GNAI3	-0.525227	8.802355e-9	1.525184e-4	4.122119e-6
38	8177851	7990400	NM_001099436	ULK3	0.525192	8.826105e-9	1.529299e-4	4.024472e-6
39	8177851	7902367	NM_000016	ACADM	-0.524430	9.355405e-9	1.621011e-4	4.156438e-6
40	8177851	7902166	NM_020948	MIER1	-0.523982	9.680304e-9	1.677306e-4	4.193266e-6
41	8177851	8006345	NM_001033568	RHOT1	-0.523595	9.969629e-9	1.727438e-4	4.213262e-6
42	8177851	8151644	NM_016033	FAM82B	-0.520970	1.216363e-8	2.107592e-4	5.018077e-6
43	8177851	8173713	NM_032121	MAGT1	-0.520734	1.238214e-8	2.145453e-4	4.989426e-6
44	8177851	7957806	NM_017988	SCYL2	-0.519607	1.347777e-8	2.335294e-4	5.307486e-6
45	8177851	7922823	NM_025191	EDEM3	-0.519527	1.355950e-8	2.349455e-4	5.221011e-6
46	8177851	7926836	NM_021252	RAB18	-0.519318	1.377367e-8	2.386563e-4	5.188181e-6
47	8177851	8092321	NM_020640	DCUN1D1	-0.518769	1.435264e-8	2.486883e-4	5.291240e-6
48	8177851	8109403	NR_024152	MFAP3	-0.518377	1.478004e-8	2.560938e-4	5.335287e-6
49	8177851	8035040	NM_021241	WIZ	0.518344	1.481656e-8	2.567266e-4	5.239318e-6
50	8177851	7978739	NM_001079537	TRAPPC6B	-0.517295	1.602429e-8	2.776529e-4	5.553059e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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