[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3574	7949206	NM_130802	MEN1		multiple endocrine neoplasia I

Fetching correlation data, please wait...
Getting list of correlations for id 3574.
Getting list of p-values for id 3574.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.133 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7949206	8030403	NM_020719	PRR12	0.644697	1.158035e-13	2.006527e-9	2.006527e-9
2	7949206	7937415	NM_020901	PHRF1	0.636942	2.792570e-13	4.838686e-9	2.419343e-9
3	7949206	8169750	NM_001042750	STAG2	-0.634217	3.782346e-13	6.553671e-9	2.184557e-9
4	7949206	7965723	NM_015054	UHRF1BP1L	-0.630741	5.545795e-13	9.609199e-9	2.402300e-9
5	7949206	7979367	NM_006544	EXOC5	-0.614001	3.280402e-12	5.683952e-8	1.136790e-8
6	7949206	8084219	NM_017644	KLHL24	-0.613280	3.533062e-12	6.121737e-8	1.020289e-8
7	7949206	8109403	NR_024152	MFAP3	-0.611993	4.031822e-12	6.985938e-8	9.979911e-9
8	7949206	8113469	NM_014819	PJA2	-0.608349	5.839977e-12	1.011893e-7	1.264866e-8
9	7949206	8052024	NM_025133	FBXO11	-0.605871	7.493552e-12	1.298408e-7	1.442675e-8
10	7949206	7903703	NM_006496	GNAI3	-0.604932	8.231765e-12	1.426318e-7	1.426318e-8
11	7949206	8022882	NM_006965	ZNF24	-0.602028	1.098379e-11	1.903161e-7	1.730146e-8
12	7949206	8052680	NM_004161	RAB1A	-0.601711	1.133380e-11	1.963808e-7	1.636506e-8
13	7949206	7997072	NM_145059	FUK	0.601077	1.206475e-11	2.090460e-7	1.608046e-8
14	7949206	8150714	NM_052937	PCMTD1	-0.599121	1.461884e-11	2.533006e-7	1.809290e-8
15	7949206	8028583	NM_001014831	PAK4	0.598457	1.559989e-11	2.702993e-7	1.801995e-8
16	7949206	8162833	NM_015051	ERP44	-0.596649	1.860015e-11	3.222848e-7	2.014280e-8
17	7949206	8092201	NM_024665	TBL1XR1	-0.594606	2.266217e-11	3.926674e-7	2.309808e-8
18	7949206	8150757	NM_014781	RB1CC1	-0.592937	2.660346e-11	4.609582e-7	2.560879e-8
19	7949206	8105191	NM_024615	PARP8	-0.591539	3.040571e-11	5.268397e-7	2.772840e-8
20	7949206	7957186	NM_022771	TBC1D15	-0.591332	3.101228e-11	5.373498e-7	2.686749e-8
21	7949206	8148208	NM_144963	FAM91A1	-0.590835	3.251283e-11	5.633499e-7	2.682618e-8
22	7949206	8137739	NM_001080453	INTS1	0.590820	3.255864e-11	5.641435e-7	2.564289e-8
23	7949206	8045381	NM_058241	CCNT2	-0.590514	3.351988e-11	5.807989e-7	2.525213e-8
24	7949206	8031815	NM_173632	ZNF776	-0.590057	3.500661e-11	6.065595e-7	2.527331e-8
25	7949206	8158240	NM_021109	TMSB4X	-0.589611	3.651846e-11	6.327554e-7	2.531022e-8
26	7949206	7902166	NM_020948	MIER1	-0.588683	3.986724e-11	6.907797e-7	2.656845e-8
27	7949206	7957806	NM_017988	SCYL2	-0.588345	4.116067e-11	7.131910e-7	2.641448e-8
28	7949206	8160718	NR_023917	PTENP1	-0.588127	4.201435e-11	7.279827e-7	2.599938e-8
29	7949206	7938748	GENSCAN00000051382		0.587233	4.570235e-11	7.918846e-7	2.730637e-8
30	7949206	7956937	NM_015646	RAP1B	-0.586514	4.888938e-11	8.471063e-7	2.823688e-8
31	7949206	7975113	NM_145165	CHURC1	-0.586057	5.102595e-11	8.841266e-7	2.852021e-8
32	7949206	7995448	NM_153261	TMEM188	-0.583598	6.416611e-11	1.111806e-6	3.474394e-8
33	7949206	8006345	NM_001033568	RHOT1	-0.582660	6.999227e-11	1.212756e-6	3.675019e-8
34	7949206	8113358	NM_005668	ST8SIA4	-0.581892	7.513530e-11	1.301869e-6	3.829027e-8
35	7949206	8147724	NM_001695	ATP6V1C1	-0.581466	7.814285e-11	1.353981e-6	3.868518e-8
36	7949206	8105463	NM_022913	GPBP1	-0.581264	7.961552e-11	1.379498e-6	3.831939e-8
37	7949206	8162147	NM_024617	ZCCHC6	-0.581065	8.108376e-11	1.404938e-6	3.797131e-8
38	7949206	8055702	NM_004688	NMI	-0.580166	8.806499e-11	1.525902e-6	4.015532e-8
39	7949206	8042119	NM_022894	PAPOLG	-0.579159	9.656646e-11	1.673207e-6	4.290275e-8
40	7949206	7991779	NM_032039	ITFG3	0.579113	9.697927e-11	1.680360e-6	4.200899e-8
41	7949206	8026217	NM_017721	CC2D1A	0.578611	1.015266e-10	1.759151e-6	4.290612e-8
42	7949206	7930454	NM_145341	PDCD4	-0.578488	1.026724e-10	1.779005e-6	4.235727e-8
43	7949206	8042270	NM_001001521	UGP2	-0.577534	1.119879e-10	1.940414e-6	4.512592e-8
44	7949206	8092933	NM_012287	ACAP2	-0.576399	1.241270e-10	2.150749e-6	4.888066e-8
45	7949206	7910265	NM_001098623	OBSCN	0.575284	1.372893e-10	2.378812e-6	5.286249e-8
46	7949206	7992347	NM_015133	MAPK8IP3	0.575050	1.402203e-10	2.429597e-6	5.281733e-8
47	7949206	8033319	NM_005490	SH2D3A	0.574769	1.438136e-10	2.491858e-6	5.301826e-8
48	7949206	7903541	NM_007269	STXBP3	-0.574205	1.512948e-10	2.621486e-6	5.461428e-8
49	7949206	8056909	NM_001880	ATF2	-0.573080	1.673673e-10	2.899974e-6	5.918313e-8
50	7949206	7977344	NM_001100913	PACS2	0.572003	1.842837e-10	3.193083e-6	6.386166e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation