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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id Label1 AccNum GeneSym Info Gene Name
17055 8158240 NM_021109 TMSB4X link to infopage thymosin beta 4, X-linked
17098 8067007 NM_021109 TMSB4X link to infopage thymosin beta 4, X-linked
17227 8166072 NM_021109 TMSB4X link to infopage thymosin beta 4, X-linked

Fetching correlation data, please wait...
Getting list of correlations for id 17055.
Getting list of p-values for id 17055.
1 of 3 done.
Getting list of correlations for id 17098.
Getting list of p-values for id 17098.
2 of 3 done.
Getting list of correlations for id 17227.
Getting list of p-values for id 17227.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.319 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8166072 8101774 NM_183049 TMSL3 link to infopage 0.988939 3.415646e-87 1.775487e-82 1.775487e-82
2 8166072 8067007 NM_021109 TMSB4X link to infopage 0.940368 4.830681e-50 2.511036e-45 1.255518e-45
3 8067007 8166072 NM_021109 TMSB4X link to infopage 0.940368 4.830681e-50 2.511036e-45 8.370121e-46
4 8158240 8067007 NM_021109 TMSB4X link to infopage 0.902744 1.598461e-39 8.308958e-35 2.077240e-35
5 8067007 8158240 NM_021109 TMSB4X link to infopage 0.902744 1.598461e-39 8.308958e-35 1.661792e-35
6 8067007 8101774 NM_183049 TMSL3 link to infopage 0.902345 1.953428e-39 1.015411e-34 1.692352e-35
7 8166072 8158240 NM_021109 TMSB4X link to infopage 0.856456 2.411010e-31 1.253267e-26 1.790382e-27
8 8158240 8166072 NM_021109 TMSB4X link to infopage 0.856456 2.411010e-31 1.253267e-26 1.566584e-27
9 8166072 7984112 NM_016530 RAB8B link to infopage 0.848222 3.423154e-30 1.779390e-25 1.977100e-26
10 8166072 7971563 NM_020357 PCNP link to infopage 0.843150 1.624288e-29 8.443213e-25 8.443213e-26
11 8158240 8101774 NM_183049 TMSL3 link to infopage 0.827915 1.276670e-27 6.636256e-23 6.032960e-24
12 8166072 7956937 NM_015646 RAP1B link to infopage 0.825498 2.452801e-27 1.274991e-22 1.062492e-23
13 8166072 8124144 NM_003472 DEK link to infopage 0.821278 7.491227e-27 3.894015e-22 2.995396e-23
14 8166072 7946610 NM_001418 EIF4G2 link to infopage 0.818196 1.662052e-26 8.639513e-22 6.171081e-23
15 8166072 8129045 NM_001527 HDAC2 link to infopage 0.817628 1.921803e-26 9.989722e-22 6.659815e-23
16 8166072 8134122 NM_005751 AKAP9 link to infopage 0.817059 2.221971e-26 1.155003e-21 7.218767e-23
17 8166072 8112728 NM_001089704 RAP1BL link to infopage 0.814389 4.357492e-26 2.265068e-21 1.332393e-22
18 8166072 8042270 NM_001001521 UGP2 link to infopage 0.813202 5.859067e-26 3.045601e-21 1.692001e-22
19 8166072 7962499 NM_004719 SRSF2IP link to infopage 0.812120 7.659637e-26 3.981556e-21 2.095556e-22
20 8166072 7976598 NM_032632 PAPOLA link to infopage 0.809169 1.577117e-25 8.198010e-21 4.099005e-22
21 8166072 8047339 NR_026584 BZW1L1 link to infopage 0.808928 1.671903e-25 8.690719e-21 4.138437e-22
22 8067007 7971563 NM_020357 PCNP link to infopage 0.806413 3.061046e-25 1.591162e-20 7.232555e-22
23 8166072 7939137 NM_006360 EIF3M link to infopage 0.804049 5.361813e-25 2.787124e-20 1.211793e-21
24 8166072 8152096 NM_145690 YWHAZ link to infopage 0.803823 5.655266e-25 2.939664e-20 1.224860e-21
25 8166072 8127943 NM_153816 SNX14 link to infopage 0.801271 1.026114e-24 5.333842e-20 2.133537e-21
26 8166072 8045619 NM_015630 EPC2 link to infopage 0.800746 1.158642e-24 6.022736e-20 2.316437e-21
27 8166072 7930380 NM_016824 ADD3 link to infopage 0.800170 1.323301e-24 6.878652e-20 2.547649e-21
28 8166072 7978570 NM_021249 SNX6 link to infopage 0.798977 1.740163e-24 9.045540e-20 3.230550e-21
29 8166072 8019924 NM_006471 MYL12A link to infopage 0.798425 1.973903e-24 1.026054e-19 3.538118e-21
30 8166072 7989323 NM_004330 BNIP2 link to infopage 0.797988 2.180712e-24 1.133556e-19 3.778520e-21
31 8166072 8158372 NM_003011 SET link to infopage 0.797744 2.304959e-24 1.198141e-19 3.864970e-21
32 8166072 7983321 NM_138423 CASC4 link to infopage 0.797246 2.580981e-24 1.341620e-19 4.192561e-21
33 8166072 8080926 NM_006407 ARL6IP5 link to infopage 0.796562 3.012262e-24 1.565804e-19 4.744860e-21
34 8166072 8084986 NM_032288 FYTTD1 link to infopage 0.795923 3.478861e-24 1.808347e-19 5.318667e-21
35 8166072 8022170 NM_001024662 RPL6 link to infopage 0.795827 3.554709e-24 1.847773e-19 5.279352e-21
36 8166072 7901418 NM_152265 BTF3L4 link to infopage 0.793816 5.571890e-24 2.896324e-19 8.045344e-21
37 8166072 7966534 NM_001024662 RPL6 link to infopage 0.793780 5.617493e-24 2.920029e-19 7.891970e-21
38 8166072 7983335 NM_016396 CTDSPL2 link to infopage 0.793765 5.635848e-24 2.929570e-19 7.709396e-21
39 8166072 8088219 NM_001112736 C3orf63 link to infopage 0.793267 6.295201e-24 3.272309e-19 8.390535e-21
40 8166072 8063283 NM_001316 CSE1L link to infopage 0.792598 7.298430e-24 3.793797e-19 9.484492e-21
41 8166072 8133030 NM_002040 GABPA link to infopage 0.792316 7.766905e-24 4.037315e-19 9.847109e-21
42 8166072 7908553 NM_002838 PTPRC link to infopage 0.792092 8.160405e-24 4.241860e-19 1.009967e-20
43 8166072 8174253 NM_001142418 MORF4L2 link to infopage 0.791572 9.147511e-24 4.754968e-19 1.105806e-20
44 8166072 8078270 NM_002948 RPL15 link to infopage 0.791395 9.511067e-24 4.943948e-19 1.123625e-20
45 8166072 7932678 NM_139312 YME1L1 link to infopage 0.790803 1.082820e-23 5.628608e-19 1.250802e-20
46 8166072 8067295 NM_016045 SLMO2 link to infopage 0.790155 1.247204e-23 6.483093e-19 1.409368e-20
47 8166072 7978776 NM_018353 C14orf106 link to infopage 0.789070 1.578769e-23 8.206598e-19 1.746085e-20
48 8166072 8039010 NM_018260 ZNF701 link to infopage 0.788510 1.781891e-23 9.262445e-19 1.929676e-20
49 8166072 8053064 NM_018221 MOBKL1B link to infopage 0.787699 2.122508e-23 1.103301e-18 2.251635e-20
50 8166072 7989253 NM_024755 SLTM link to infopage 0.786913 2.512133e-23 1.305832e-18 2.611664e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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