[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4724	7943580	NM_003478	CUL5		cullin 5

Fetching correlation data, please wait...
Getting list of correlations for id 4724.
Getting list of p-values for id 4724.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.127 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7943580	7913712	NM_006625	SRSF10	0.897742	1.857848e-38	3.219093e-34	3.219093e-34
2	7943580	8023735	NM_019022	TMX3	0.896758	2.964920e-38	5.137317e-34	2.568658e-34
3	7943580	8039947	NM_006625	SRSF10	0.884423	7.181248e-36	1.244295e-31	4.147650e-32
4	7943580	7938448	NM_017944	USP47	0.879359	5.721448e-35	9.913553e-31	2.478388e-31
5	7943580	8140942	NM_001040057	FAM133B	0.878967	6.694389e-35	1.159937e-30	2.319873e-31
6	7943580	8092564	NM_004593	TRA2B	0.878077	9.534187e-35	1.651989e-30	2.753314e-31
7	7943580	8050658	NM_017552	ATAD2B	0.876836	1.554916e-34	2.694202e-30	3.848860e-31
8	7943580	8135235	NM_004279	PMPCB	0.875200	2.938532e-34	5.091595e-30	6.364493e-31
9	7943580	8131479	NM_019005	MIOS	0.875122	3.027686e-34	5.246072e-30	5.828969e-31
10	7943580	8084146	NM_001013439	FXR1	0.869693	2.348899e-33	4.069937e-29	4.069937e-30
11	7943580	8063283	NM_001316	CSE1L	0.868882	3.163832e-33	5.481972e-29	4.983611e-30
12	7943580	8135688	NM_016200	NAA38	0.868761	3.306989e-33	5.730020e-29	4.775017e-30
13	7943580	7908421	NM_004600	TROVE2	0.868038	4.306197e-33	7.461348e-29	5.739499e-30
14	7943580	8088219	NM_001112736	C3orf63	0.864287	1.651459e-32	2.861483e-28	2.043916e-29
15	7943580	8023165	NM_032124	HDHD2	0.862157	3.480710e-32	6.031026e-28	4.020684e-29
16	7943580	7975224	NM_004094	EIF2S1	0.861013	5.167697e-32	8.954069e-28	5.596293e-29
17	7943580	8129706	NM_006620	HBS1L	0.860854	5.457222e-32	9.455728e-28	5.562193e-29
18	7943580	7916570	NM_145243	OMA1	0.859404	8.956392e-32	1.551874e-27	8.621522e-29
19	7943580	8046759	NM_018981	DNAJC10	0.858643	1.159144e-31	2.008449e-27	1.057078e-28
20	7943580	7953878	NM_001004419	CLEC2D	0.857219	1.870393e-31	3.240830e-27	1.620415e-28
21	7943580	8105504	NM_152789	FAM133B	0.855088	3.789790e-31	6.566569e-27	3.126937e-28
22	7943580	7969271	NM_001130912	SUGT1	0.854514	4.574892e-31	7.926916e-27	3.603143e-28
23	7943580	7902382	NM_004582	RABGGTB	0.853857	5.670168e-31	9.824699e-27	4.271608e-28
24	7943580	7973770	NM_016106	SCFD1	0.853264	6.875686e-31	1.191350e-26	4.963959e-28
25	7943580	8132943	NM_001762	CCT6A	0.852807	7.972003e-31	1.381309e-26	5.525236e-28
26	7943580	8091190	NM_001184	ATR	0.852718	8.203858e-31	1.421483e-26	5.467240e-28
27	7943580	7971820	NM_016075	VPS36	0.852622	8.462357e-31	1.466273e-26	5.430639e-28
28	7943580	7935320	NM_020123	TM9SF3	0.852511	8.769774e-31	1.519539e-26	5.426924e-28
29	7943580	8081256	NM_018309	TBC1D23	0.852128	9.921582e-31	1.719112e-26	5.927974e-28
30	7943580	8045697	NM_018151	RIF1	0.851947	1.051700e-30	1.822280e-26	6.074266e-28
31	7943580	7971967	NM_014953	DIS3	0.851360	1.269278e-30	2.199278e-26	7.094444e-28
32	7943580	8100615	NM_018227	UBA6	0.850057	1.921693e-30	3.329718e-26	1.040537e-27
33	7943580	7970546	NM_152726	EFHA1	0.849262	2.469957e-30	4.279695e-26	1.296877e-27
34	7943580	8121161	NM_015323	KIAA0776	0.849200	2.518730e-30	4.364204e-26	1.283589e-27
35	7943580	8067295	NM_016045	SLMO2	0.848905	2.763382e-30	4.788113e-26	1.368032e-27
36	7943580	7917120	NM_015017	USP33	0.848886	2.780464e-30	4.817710e-26	1.338253e-27
37	7943580	8109802	NM_002887	RARS	0.848804	2.853162e-30	4.943674e-26	1.336128e-27
38	7943580	7903519	NM_018061	PRPF38B	0.848753	2.899017e-30	5.023127e-26	1.321876e-27
39	7943580	8128472	NM_006828	ASCC3	0.848750	2.902006e-30	5.028305e-26	1.289309e-27
40	7943580	8146243	NM_032410	HOOK3	0.848649	2.995428e-30	5.190178e-26	1.297544e-27
41	7943580	8089584	NM_015412	C3orf17	0.848525	3.113902e-30	5.395458e-26	1.315965e-27
42	7943580	7969935	NM_000123	ERCC5	0.848234	3.410341e-30	5.909098e-26	1.406928e-27
43	7943580	7929168	NM_025235	TNKS2	0.848075	3.584612e-30	6.211057e-26	1.444432e-27
44	7943580	8097704	NM_018241	TMEM184C	0.848013	3.653747e-30	6.330847e-26	1.438829e-27
45	7943580	8046848	NM_018471	ZC3H15	0.847791	3.915874e-30	6.785035e-26	1.507786e-27
46	7943580	8140878	NM_194455	KRIT1	0.847224	4.670805e-30	8.093103e-26	1.759370e-27
47	7943580	8018038	NM_018672	ABCA5	0.847067	4.904298e-30	8.497677e-26	1.808016e-27
48	7943580	8040386	NM_004939	DDX1	0.847064	4.909732e-30	8.507093e-26	1.772311e-27
49	7943580	8044766	NM_016133	INSIG2	0.846342	6.136486e-30	1.063269e-25	2.169937e-27
50	7943580	8082911	NM_006153	NCK1	0.846191	6.429954e-30	1.114118e-25	2.228236e-27

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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