Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7237	7971967	NM_014953	DIS3		DIS3 mitotic control homolog (S. cerevisiae)

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7971967	8084146	NM_001013439	FXR1		0.908280	9.023788e-41	1.563552e-36	1.563552e-36
2	7971967	8005501	NM_001135036	FAM18B2		0.902449	1.854376e-39	3.213078e-35	1.606539e-35
3	7971967	8116664	NM_003913	PRPF4B		0.895750	4.763873e-38	8.254363e-34	2.751454e-34
4	7971967	8173673	NM_000489	ATRX		0.895084	6.498776e-38	1.126043e-33	2.815107e-34
5	7971967	7938448	NM_017944	USP47		0.893637	1.266807e-37	2.194997e-33	4.389993e-34
6	7971967	8055913	NM_017892	PRPF40A		0.893377	1.427088e-37	2.472715e-33	4.121192e-34
7	7971967	8134122	NM_005751	AKAP9		0.892620	2.014092e-37	3.489817e-33	4.985453e-34
8	7971967	8120992	NM_015021	ZNF292		0.890384	5.492187e-37	9.516313e-33	1.189539e-33
9	7971967	7969228	NM_001004127	ALG11		0.890054	6.355404e-37	1.101201e-32	1.223556e-33
10	7971967	7951008	NM_024116	TAF1D		0.890012	6.474751e-37	1.121880e-32	1.121880e-33
11	7971967	7934278	NM_000917	P4HA1		0.889557	7.914454e-37	1.371337e-32	1.246670e-33
12	7971967	8140942	NM_001040057	FAM133B		0.889357	8.640019e-37	1.497056e-32	1.247547e-33
13	7971967	8127698	NM_017934	PHIP		0.889273	8.963678e-37	1.553136e-32	1.194720e-33
14	7971967	8050658	NM_017552	ATAD2B		0.888403	1.311533e-36	2.272493e-32	1.623209e-33
15	7971967	7903032	NM_007358	MTF2		0.887055	2.349590e-36	4.071134e-32	2.714089e-33
16	7971967	8105504	NM_152789	FAM133B		0.886240	3.330564e-36	5.770869e-32	3.606793e-33
17	7971967	7951447	NM_152434	CWF19L2		0.884661	6.498492e-36	1.125994e-31	6.623492e-33
18	7971967	8100615	NM_018227	UBA6		0.884600	6.667744e-36	1.155320e-31	6.418445e-33
19	7971967	7989253	NM_024755	SLTM		0.883732	9.588145e-36	1.661338e-31	8.743883e-33
20	7971967	8070341	NM_033656	BRWD1		0.882672	1.487658e-35	2.577666e-31	1.288833e-32
21	7971967	8084128	NM_133462	TTC14		0.882500	1.597548e-35	2.768071e-31	1.318129e-32
22	7971967	8116227	NM_020666	CLK4		0.880484	3.638265e-35	6.304021e-31	2.865464e-32
23	7971967	8083183	NM_001080415	SR140		0.880161	4.145600e-35	7.183080e-31	3.123078e-32
24	7971967	7970907	NM_014887	N4BP2L2		0.879918	4.571387e-35	7.920843e-31	3.300351e-32
25	7971967	8121161	NM_015323	KIAA0776		0.879633	5.126266e-35	8.882281e-31	3.552912e-32
26	7971967	7908421	NM_004600	TROVE2		0.879547	5.307547e-35	9.196387e-31	3.537072e-32
27	7971967	8045697	NM_018151	RIF1		0.878245	8.920099e-35	1.545585e-30	5.724391e-32
28	7971967	7987981	NM_174916	UBR1		0.876863	1.538220e-34	2.665274e-30	9.518836e-32
29	7971967	7975068	NM_001123329	ZBTB1		0.876341	1.886480e-34	3.268704e-30	1.127139e-31
30	7971967	8092564	NM_004593	TRA2B		0.875820	2.310969e-34	4.004217e-30	1.334739e-31
31	7971967	8018038	NM_018672	ABCA5		0.875634	2.484513e-34	4.304916e-30	1.388683e-31
32	7971967	7903519	NM_018061	PRPF38B		0.875492	2.624189e-34	4.546932e-30	1.420916e-31
33	7971967	8039947	NM_006625	SRSF10		0.874185	4.340858e-34	7.521404e-30	2.279213e-31
34	7971967	8069711	NM_015565	RNF160		0.874093	4.497809e-34	7.793353e-30	2.292163e-31
35	7971967	8068062	NM_006447	USP16		0.873795	5.040278e-34	8.733290e-30	2.495226e-31
36	7971967	8091190	NM_001184	ATR		0.873702	5.220981e-34	9.046394e-30	2.512887e-31
37	7971967	7925561	NM_198076	FAM36A		0.873187	6.353028e-34	1.100789e-29	2.975106e-31
38	7971967	8090898	NM_005862	STAG1		0.873166	6.404227e-34	1.109660e-29	2.920159e-31
39	7971967	7974483	NM_182926	KTN1		0.872726	7.565021e-34	1.310791e-29	3.361003e-31
40	7971967	7976598	NM_032632	PAPOLA		0.872478	8.308126e-34	1.439549e-29	3.598872e-31
41	7971967	7929562	NM_014803	ZNF518A		0.872339	8.754339e-34	1.516864e-29	3.699669e-31
42	7971967	8144812	NM_006197	PCM1		0.872230	9.122811e-34	1.580709e-29	3.763594e-31
43	7971967	8085852	NM_018297	NGLY1		0.872118	9.517081e-34	1.649025e-29	3.834941e-31
44	7971967	8113305	NM_001270	CHD1		0.871666	1.127579e-33	1.953755e-29	4.440353e-31
45	7971967	8055978	NM_152789	FAM133B		0.871387	1.251933e-33	2.169225e-29	4.820500e-31
46	7971967	7935320	NM_020123	TM9SF3		0.871253	1.316086e-33	2.280382e-29	4.957351e-31
47	7971967	7967900	NM_003453	ZMYM2		0.870566	1.700296e-33	2.946104e-29	6.268306e-31
48	7971967	7986769	NM_130839	UBE3A		0.870175	1.965455e-33	3.405543e-29	7.094881e-31
49	7971967	7900395	NM_012421	RLF		0.870084	2.032953e-33	3.522497e-29	7.188770e-31
50	7971967	7924190	NM_144567	ANGEL2		0.869782	2.272315e-33	3.937240e-29	7.874481e-31

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.