[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
7424	8165773	NR_027383	SFRS17A		splicing factor, arginine/serine-rich 17A
7425	8176342	NR_027383	SFRS17A		splicing factor, arginine/serine-rich 17A

Fetching correlation data, please wait...
Getting list of correlations for id 7424.
Getting list of p-values for id 7424.
1 of 2 done.
Getting list of correlations for id 7425.
Getting list of p-values for id 7425.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.192 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8165773	8176342	NR_027383	SFRS17A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8176342	8165773	NR_027383	SFRS17A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8165773	8071466	NM_006767	LZTR1	0.581847	7.544940e-11	2.614624e-6	8.715412e-7
4	8176342	8071466	NM_006767	LZTR1	0.581847	7.544940e-11	2.614624e-6	6.536559e-7
5	8176342	8137739	NM_001080453	INTS1	0.551724	1.059939e-9	3.673113e-5	7.346226e-6
6	8165773	8137739	NM_001080453	INTS1	0.551724	1.059939e-9	3.673113e-5	6.121855e-6
7	8165773	8010638	NM_004712	HGS	0.549971	1.226345e-9	4.249776e-5	6.071109e-6
8	8176342	8010638	NM_004712	HGS	0.549971	1.226345e-9	4.249776e-5	5.312220e-6
9	8165773	7956018	NM_002905	RDH5	0.537355	3.417205e-9	1.184198e-4	1.315776e-5
10	8176342	7956018	NM_002905	RDH5	0.537355	3.417205e-9	1.184198e-4	1.184198e-5
11	8165773	8072825	NM_013365	GGA1	0.534072	4.431192e-9	1.535585e-4	1.395987e-5
12	8176342	8072825	NM_013365	GGA1	0.534072	4.431192e-9	1.535585e-4	1.279654e-5
13	8176342	8080344	NM_015136	STAB1	0.531391	5.467578e-9	1.894734e-4	1.457488e-5
14	8165773	8080344	NM_015136	STAB1	0.531391	5.467578e-9	1.894734e-4	1.353382e-5
15	8165773	8080121	NM_015926	TEX264	0.528938	6.615828e-9	2.292649e-4	1.528433e-5
16	8176342	8080121	NM_015926	TEX264	0.528938	6.615828e-9	2.292649e-4	1.432906e-5
17	8165773	7937415	NM_020901	PHRF1	0.528900	6.635250e-9	2.299380e-4	1.352576e-5
18	8176342	7937415	NM_020901	PHRF1	0.528900	6.635250e-9	2.299380e-4	1.277433e-5
19	8165773	7941350	NM_032223	PCNXL3	0.527113	7.616892e-9	2.639558e-4	1.389241e-5
20	8176342	7941350	NM_032223	PCNXL3	0.527113	7.616892e-9	2.639558e-4	1.319779e-5
21	8176342	8039316	NM_017607	PPP1R12C	0.526586	7.931872e-9	2.748711e-4	1.308910e-5
22	8165773	8039316	NM_017607	PPP1R12C	0.526586	7.931872e-9	2.748711e-4	1.249414e-5
23	8165773	8139281	NM_013284	POLM	0.521625	1.157660e-8	4.011753e-4	1.744241e-5
24	8176342	8139281	NM_013284	POLM	0.521625	1.157660e-8	4.011753e-4	1.671564e-5
25	8176342	7960559	NM_080730	IFFO1	0.521082	1.206151e-8	4.179796e-4	1.671918e-5
26	8165773	7960559	NM_080730	IFFO1	0.521082	1.206151e-8	4.179796e-4	1.607614e-5
27	8165773	8099037	NM_001146069	MFSD10	0.520603	1.250477e-8	4.333405e-4	1.604965e-5
28	8176342	8099037	NM_001146069	MFSD10	0.520603	1.250477e-8	4.333405e-4	1.547645e-5
29	8165773	8026610	NM_015260	SIN3B	0.520037	1.304956e-8	4.522194e-4	1.559377e-5
30	8176342	8026610	NM_015260	SIN3B	0.520037	1.304956e-8	4.522194e-4	1.507398e-5
31	8176342	8066641	NM_022095	ZNF335	0.518212	1.496401e-8	5.185628e-4	1.672783e-5
32	8165773	8066641	NM_022095	ZNF335	0.518212	1.496401e-8	5.185628e-4	1.620509e-5
33	8165773	7941865	NM_004584	RAD9A	0.515928	1.773906e-8	6.147294e-4	1.862816e-5
34	8176342	7941865	NM_004584	RAD9A	0.515928	1.773906e-8	6.147294e-4	1.808028e-5
35	8176342	7994445	NM_015503	SH2B1	0.515191	1.873505e-8	6.492445e-4	1.854984e-5
36	8165773	7994445	NM_015503	SH2B1	0.515191	1.873505e-8	6.492445e-4	1.803457e-5
37	8176342	7990400	NM_001099436	ULK3	0.510559	2.633581e-8	9.126412e-4	2.466598e-5
38	8165773	7990400	NM_001099436	ULK3	0.510559	2.633581e-8	9.126412e-4	2.401687e-5
39	8165773	8131265	NM_014855	KIAA0415	0.502178	4.814492e-8	1.668414e-3	4.277985e-5
40	8176342	8131265	NM_014855	KIAA0415	0.502178	4.814492e-8	1.668414e-3	4.171035e-5
41	8165773	7934114	NM_173555	TYSND1	0.501405	5.085926e-8	1.762477e-3	4.298724e-5
42	8176342	7934114	NM_173555	TYSND1	0.501405	5.085926e-8	1.762477e-3	4.196373e-5
43	8176342	8076909	NM_020461	TUBGCP6	0.498738	6.138790e-8	2.127336e-3	4.947294e-5
44	8165773	8076909	NM_020461	TUBGCP6	0.498738	6.138790e-8	2.127336e-3	4.834855e-5
45	8176342	8114709	NM_033449	FCHSD1	0.495810	7.533500e-8	2.610659e-3	5.801464e-5
46	8165773	8114709	NM_033449	FCHSD1	0.495810	7.533500e-8	2.610659e-3	5.675346e-5
47	8176342	8033207	NM_024898	DENND1C	0.493392	8.908360e-8	3.087103e-3	6.568305e-5
48	8165773	8033207	NM_024898	DENND1C	0.493392	8.908360e-8	3.087103e-3	6.431465e-5
49	8176342	8153568	NM_201384	PLEC	0.493195	9.030372e-8	3.129385e-3	6.386500e-5
50	8165773	8153568	NM_201384	PLEC	0.493195	9.030372e-8	3.129385e-3	6.258770e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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