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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
5053 7956018 NM_002905 RDH5 link to infopage retinol dehydrogenase 5 (11-cis/9-cis)

Fetching correlation data, please wait...
Getting list of correlations for id 5053.
Getting list of p-values for id 5053.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.124 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7956018 8023561 NM_005570 LMAN1 link to infopage -0.675709 2.626062e-15 4.550178e-11 4.550178e-11
2 7956018 8146482 NM_024831 TGS1 link to infopage -0.661033 1.665868e-14 2.886450e-10 1.443225e-10
3 7956018 7904340 NM_006699 MAN1A2 link to infopage -0.641805 1.612758e-13 2.794426e-9 9.314754e-10
4 7956018 7971620 NM_002267 KPNA3 link to infopage -0.633756 3.980330e-13 6.896717e-9 1.724179e-9
5 7956018 8001211 NM_030790 ITFG1 link to infopage -0.633643 4.030199e-13 6.983126e-9 1.396625e-9
6 7956018 7975562 NM_173462 PAPLN link to infopage 0.631641 5.024573e-13 8.706078e-9 1.451013e-9
7 7956018 8080645 NM_012096 APPL1 link to infopage -0.630844 5.483252e-13 9.500830e-9 1.357261e-9
8 7956018 8176669 ENST00000384790 link to infopage 0.627536 7.858888e-13 1.361709e-8 1.702137e-9
9 7956018 8177189 ENST00000384790 link to infopage 0.627536 7.858888e-13 1.361709e-8 1.513010e-9
10 7956018 8137336 NM_004769 ACCN3 link to infopage 0.626194 9.083312e-13 1.573866e-8 1.573866e-9
11 7956018 8040618 NM_016131 RAB10 link to infopage -0.622767 1.310527e-12 2.270750e-8 2.064318e-9
12 7956018 8109697 NM_004060 CCNG1 link to infopage -0.621445 1.507793e-12 2.612554e-8 2.177128e-9
13 7956018 7906852 NM_175866 UHMK1 link to infopage -0.621426 1.510694e-12 2.617579e-8 2.013522e-9
14 7956018 8067295 NM_016045 SLMO2 link to infopage -0.621218 1.544332e-12 2.675864e-8 1.911331e-9
15 7956018 8056734 NM_012290 TLK1 link to infopage -0.618960 1.958957e-12 3.394285e-8 2.262857e-9
16 7956018 8132070 NM_002047 GARS link to infopage -0.617973 2.172195e-12 3.763762e-8 2.352351e-9
17 7956018 8094704 NM_005339 UBE2K link to infopage -0.617488 2.284984e-12 3.959192e-8 2.328936e-9
18 7956018 8095262 NM_005612 REST link to infopage -0.615687 2.755806e-12 4.774986e-8 2.652770e-9
19 7956018 8154531 NM_017925 DENND4C link to infopage -0.612704 3.748598e-12 6.495195e-8 3.418524e-9
20 7956018 8047339 NR_026584 BZW1L1 link to infopage -0.612418 3.860294e-12 6.688731e-8 3.344365e-9
21 7956018 7957540 NM_014050 MRPL42 link to infopage -0.612209 3.943803e-12 6.833428e-8 3.254013e-9
22 7956018 7978285 NM_139247 ADCY4 link to infopage 0.611953 4.048488e-12 7.014815e-8 3.188552e-9
23 7956018 8113083 NM_032042 FAM172A link to infopage -0.611534 4.225757e-12 7.321969e-8 3.183465e-9
24 7956018 7896882 NM_001130413 SCNN1D link to infopage 0.610293 4.795457e-12 8.309089e-8 3.462120e-9
25 7956018 7939137 NM_006360 EIF3M link to infopage -0.610249 4.816835e-12 8.346130e-8 3.338452e-9
26 7956018 8110589 NM_015455 CNOT6 link to infopage -0.609558 5.167439e-12 8.953621e-8 3.443700e-9
27 7956018 8158372 NM_003011 SET link to infopage -0.609374 5.264629e-12 9.122022e-8 3.378527e-9
28 7956018 8097568 AK126441 FLJ44477 link to infopage 0.608847 5.553640e-12 9.622792e-8 3.436711e-9
29 7956018 8070744 NM_004928 C21orf2 link to infopage 0.606970 6.710853e-12 1.162790e-7 4.009619e-9
30 7956018 8135576 NM_015641 TES link to infopage -0.606507 7.030945e-12 1.218252e-7 4.060840e-9
31 7956018 8028227 NM_152604 ZNF383 link to infopage -0.604936 8.228626e-12 1.425774e-7 4.599271e-9
32 7956018 7908421 NM_004600 TROVE2 link to infopage -0.604464 8.624614e-12 1.494387e-7 4.669959e-9
33 7956018 8044417 NM_032824 TMEM87B link to infopage -0.604032 9.003828e-12 1.560093e-7 4.727555e-9
34 7956018 7932911 NM_004521 KIF5B link to infopage -0.603494 9.499325e-12 1.645948e-7 4.841023e-9
35 7956018 8072153 NM_173510 CCDC117 link to infopage -0.603319 9.665952e-12 1.674819e-7 4.785198e-9
36 7956018 7903988 NM_001010935 RAP1A link to infopage -0.602501 1.048174e-11 1.816171e-7 5.044921e-9
37 7956018 8084986 NM_032288 FYTTD1 link to infopage -0.601450 1.162969e-11 2.015077e-7 5.446154e-9
38 7956018 8116760 NM_031480 RIOK1 link to infopage -0.601206 1.191231e-11 2.064046e-7 5.431700e-9
39 7956018 8127787 NM_015525 IBTK link to infopage -0.600966 1.219695e-11 2.113366e-7 5.418888e-9
40 7956018 7948997 NM_015459 ATL3 link to infopage -0.600912 1.226215e-11 2.124663e-7 5.311656e-9
41 7956018 7985620 NM_020778 ALPK3 link to infopage 0.600505 1.276359e-11 2.211547e-7 5.394017e-9
42 7956018 7914260 NM_002379 MATN1 link to infopage 0.600453 1.282873e-11 2.222834e-7 5.292461e-9
43 7956018 8083063 NM_001104647 SLC25A36 link to infopage -0.600140 1.323004e-11 2.292369e-7 5.331091e-9
44 7956018 7957737 NM_001032283 TMPO link to infopage -0.600100 1.328120e-11 2.301234e-7 5.230077e-9
45 7956018 8086908 NM_001130082 PLXNB1 link to infopage 0.599790 1.369156e-11 2.372337e-7 5.271861e-9
46 7956018 8042335 NM_003375 VDAC2 link to infopage -0.599339 1.431039e-11 2.479561e-7 5.390351e-9
47 7956018 8147156 NM_007013 WWP1 link to infopage -0.599199 1.450794e-11 2.513791e-7 5.348492e-9
48 7956018 8089234 NM_014415 ZBTB11 link to infopage -0.598201 1.599335e-11 2.771168e-7 5.773267e-9
49 7956018 7969271 NM_001130912 SUGT1 link to infopage -0.598007 1.629926e-11 2.824173e-7 5.763619e-9
50 7956018 8059689 NM_005381 NCL link to infopage -0.597146 1.772494e-11 3.071201e-7 6.142402e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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