[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
926	8150364	NM_031940	TM2D2		TM2 domain containing 2

Fetching correlation data, please wait...
Getting list of correlations for id 926.
Getting list of p-values for id 926.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.118 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8150364	7950644	NM_004549	NDUFC2	0.753377	1.835128e-20	3.179726e-16	3.179726e-16
2	8150364	8161242	NM_016042	EXOSC3	0.749440	3.713577e-20	6.434515e-16	3.217258e-16
3	8150364	7973770	NM_016106	SCFD1	0.737116	3.108499e-19	5.386096e-15	1.795365e-15
4	8150364	8121734	NM_014034	ASF1A	0.733298	5.862028e-19	1.015714e-14	2.539284e-15
5	8150364	7974603	NM_002788	PSMA3	0.731941	7.325038e-19	1.269209e-14	2.538419e-15
6	8150364	8058147	NM_131916	PPIL3	0.726425	1.787210e-18	3.096698e-14	5.161164e-15
7	8150364	7987361	NM_014106	ZNF770	0.723223	2.970392e-18	5.146799e-14	7.352570e-15
8	8150364	7902634	NM_025065	RPF1	0.720075	4.860616e-18	8.421989e-14	1.052749e-14
9	8150364	8112728	NM_001089704	RAP1BL	0.716874	7.965443e-18	1.380172e-13	1.533525e-14
10	8150364	7922309	NM_003762	VAMP4	0.715924	9.210334e-18	1.595875e-13	1.595875e-14
11	8150364	7938448	NM_017944	USP47	0.715049	1.052368e-17	1.823438e-13	1.657671e-14
12	8150364	8128716	NM_006016	CD164	0.714525	1.139617e-17	1.974614e-13	1.645512e-14
13	8150364	8063283	NM_001316	CSE1L	0.713689	1.293405e-17	2.241083e-13	1.723910e-14
14	8150364	8112967	NM_174909	TMEM167A	0.710783	2.001488e-17	3.467978e-13	2.477127e-14
15	8150364	8081073	NM_173824	C3orf38	0.707845	3.095144e-17	5.362956e-13	3.575304e-14
16	8150364	8040386	NM_004939	DDX1	0.707763	3.132606e-17	5.427866e-13	3.392416e-14
17	8150364	8135235	NM_004279	PMPCB	0.705671	4.259021e-17	7.379605e-13	4.340944e-14
18	8150364	7969271	NM_001130912	SUGT1	0.705316	4.485269e-17	7.771625e-13	4.317569e-14
19	8150364	7902345	NM_138467	TYW3	0.705026	4.678980e-17	8.107269e-13	4.266984e-14
20	8150364	7956937	NM_015646	RAP1B	0.701393	7.914501e-17	1.371346e-12	6.856728e-14
21	8150364	7913712	NM_006625	SRSF10	0.701383	7.925714e-17	1.373289e-12	6.539469e-14
22	8150364	8101043	NM_203505	G3BP2	0.701003	8.370410e-17	1.450341e-12	6.592459e-14
23	8150364	7935730	NM_018294	CWF19L1	0.700244	9.330459e-17	1.616689e-12	7.029081e-14
24	8150364	8146216	NM_001135694	VDAC3	0.698001	1.283603e-16	2.224100e-12	9.267081e-14
25	8150364	7927389	NM_002750	MAPK8	0.697903	1.301611e-16	2.255302e-12	9.021208e-14
26	8150364	8039947	NM_006625	SRSF10	0.697879	1.306017e-16	2.262936e-12	8.703599e-14
27	8150364	8082911	NM_006153	NCK1	0.697738	1.332253e-16	2.308395e-12	8.549610e-14
28	8150364	7960553	NM_016497	MRPL51	0.696910	1.497510e-16	2.594736e-12	9.266914e-14
29	8150364	7993872	NM_003366	UQCRC2	0.695779	1.755824e-16	3.042316e-12	1.049074e-13
30	8150364	8088384	NM_000925	PDHB	0.695026	1.950975e-16	3.380454e-12	1.126818e-13
31	8150364	7910398	NM_004578	RAB4A	0.694825	2.006734e-16	3.477068e-12	1.121635e-13
32	8150364	7980940	NM_004993	ATXN3	0.694478	2.106394e-16	3.649749e-12	1.140547e-13
33	8150364	7971820	NM_016075	VPS36	0.694468	2.109213e-16	3.654633e-12	1.107465e-13
34	8150364	7928300	NM_173473	ANAPC16	0.694340	2.147162e-16	3.720387e-12	1.094232e-13
35	8150364	8011875	NM_016041	DERL2	0.694105	2.218612e-16	3.844189e-12	1.098340e-13
36	8150364	7943297	NM_014679	CEP57	0.693924	2.275229e-16	3.942290e-12	1.095080e-13
37	8150364	8020323	NM_003799	RNMT	0.692084	2.937086e-16	5.089089e-12	1.375430e-13
38	8150364	8069532	NM_006948	HSPA13	0.691488	3.188763e-16	5.525169e-12	1.453992e-13
39	8150364	7954388	NM_016072	GOLT1B	0.690678	3.565067e-16	6.177191e-12	1.583895e-13
40	8150364	8084694	NM_001967	EIF4A2	0.690611	3.598194e-16	6.234590e-12	1.558648e-13
41	8150364	8129706	NM_006620	HBS1L	0.690176	3.819613e-16	6.618244e-12	1.614206e-13
42	8150364	7961964	NM_018164	C12orf11	0.689871	3.982496e-16	6.900470e-12	1.642969e-13
43	8150364	8132943	NM_001762	CCT6A	0.689336	4.284805e-16	7.424282e-12	1.726577e-13
44	8150364	7971550	NM_014166	MED4	0.689271	4.323078e-16	7.490598e-12	1.702409e-13
45	8150364	7947221	NM_018362	LIN7C	0.688551	4.769330e-16	8.263818e-12	1.836404e-13
46	8150364	8023165	NM_032124	HDHD2	0.688492	4.807812e-16	8.330495e-12	1.810977e-13
47	8150364	8114193	NM_001033503	SAR1B	0.688228	4.983874e-16	8.635559e-12	1.837353e-13
48	8150364	7961654	NM_002907	RECQL	0.688205	4.999744e-16	8.663056e-12	1.804803e-13
49	8150364	8135688	NM_016200	NAA38	0.687911	5.203087e-16	9.015389e-12	1.839875e-13
50	8150364	7974566	NM_018229	MUDENG	0.687895	5.214537e-16	9.035228e-12	1.807046e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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