[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4277	8079637	NM_130384	ATRIP		ATR interacting protein

Fetching correlation data, please wait...
Getting list of correlations for id 4277.
Getting list of p-values for id 4277.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.115 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8079637	8010787	NM_173620	HEXDC	0.609559	5.166638e-12	8.952233e-8	8.952233e-8
2	8079637	8024347	NM_079834	SCAMP4	0.585612	5.319513e-11	9.217120e-7	4.608560e-7
3	8079637	8053449	NM_001031738	TMEM150A	0.581543	7.759069e-11	1.344414e-6	4.481380e-7
4	8079637	8077786	NM_001570	IRAK2	0.575759	1.315254e-10	2.278940e-6	5.697349e-7
5	8079637	7967358	NM_020845	PITPNM2	0.572609	1.745751e-10	3.024863e-6	6.049726e-7
6	8079637	7922646	NM_022347	TOR1AIP2	-0.567844	2.663987e-10	4.615891e-6	7.693152e-7
7	8079637	8009875	NR_003587	MYO15B	0.563057	4.045523e-10	7.009679e-6	1.001383e-6
8	8079637	8177011	NM_004192	ASMTL	0.555580	7.668753e-10	1.328765e-5	1.660956e-6
9	8079637	8171119	NM_004192	ASMTL	0.554122	8.671159e-10	1.502452e-5	1.669391e-6
10	8079637	8042119	NM_022894	PAPOLG	-0.550025	1.220813e-9	2.115303e-5	2.115303e-6
11	8079637	8084219	NM_017644	KLHL24	-0.546653	1.612371e-9	2.793755e-5	2.539777e-6
12	8079637	7986160	NM_001039675	UNC45A	0.544129	1.981523e-9	3.433385e-5	2.861154e-6
13	8079637	8034615	NM_017722	TRMT1	0.541220	2.507698e-9	4.345089e-5	3.342376e-6
14	8079637	8008339	NM_018346	RSAD1	0.538407	3.142488e-9	5.444989e-5	3.889278e-6
15	8079637	8112070	ENST00000364499		-0.535264	4.033633e-9	6.989076e-5	4.659384e-6
16	8079637	8012079	NM_004422	DVL2	0.534642	4.236455e-9	7.340505e-5	4.587816e-6
17	8079637	7902267	NR_023916	PIN1L	0.534244	4.371456e-9	7.574422e-5	4.455543e-6
18	8079637	7992271	NM_016111	TELO2	0.533773	4.536724e-9	7.860781e-5	4.367101e-6
19	8079637	8007188	NM_033133	CNP	0.533102	4.782218e-9	8.286149e-5	4.361131e-6
20	8079637	8156295	NM_024077	SECISBP2	-0.532618	4.967336e-9	8.606902e-5	4.303451e-6
21	8079637	7916135	NM_032449	CC2D1B	0.528068	7.076204e-9	1.226094e-4	5.838543e-6
22	8079637	7983922			-0.527865	7.188140e-9	1.245489e-4	5.661314e-6
23	8079637	7915333	NM_014747	RIMS3	0.527497	7.394539e-9	1.281252e-4	5.570660e-6
24	8079637	8024323	NM_138393	REEP6	0.526840	7.778317e-9	1.347749e-4	5.615621e-6
25	8079637	8087790	NM_004704	RRP9	0.525322	8.739032e-9	1.514212e-4	6.056848e-6
26	8079637	8140020	NM_018044	NSUN5	0.524983	8.968601e-9	1.553990e-4	5.976883e-6
27	8079637	8158544	NM_014064	METTL11A	0.523031	1.040662e-8	1.803155e-4	6.678350e-6
28	8079637	8179648	NM_005275	GNL1	0.520485	1.261664e-8	2.186084e-4	7.807445e-6
29	8079637	7991034	NM_199330	HOMER2	0.519861	1.322296e-8	2.291142e-4	7.900490e-6
30	8079637	8024798	NM_018074	CCDC94	0.518194	1.498404e-8	2.596284e-4	8.654280e-6
31	8079637	7991779	NM_032039	ITFG3	0.517933	1.527920e-8	2.647427e-4	8.540088e-6
32	8079637	8094520	NM_032456	PCDH7	0.517228	1.610476e-8	2.790471e-4	8.720222e-6
33	8079637	8049702	NM_023083	CAPN10	0.516853	1.656005e-8	2.869360e-4	8.695030e-6
34	8079637	8072825	NM_013365	GGA1	0.516661	1.679857e-8	2.910689e-4	8.560849e-6
35	8079637	8007637	NM_001466	FZD2	0.516436	1.708250e-8	2.959885e-4	8.456815e-6
36	8079637	8010719	NM_144999	LRRC45	0.516401	1.712744e-8	2.967671e-4	8.243530e-6
37	8079637	7941900	NM_003952	RPS6KB2	0.513277	2.157899e-8	3.738991e-4	1.010538e-5
38	8079637	8105191	NM_024615	PARP8	-0.513261	2.160518e-8	3.743529e-4	9.851392e-6
39	8079637	8171079	NM_012227	GTPBP6	0.512703	2.250899e-8	3.900132e-4	1.000034e-5
40	8079637	8074020	NM_031454	SELO	0.512284	2.321371e-8	4.022240e-4	1.005560e-5
41	8079637	8003233	NR_027490	MTHFSD	0.511139	2.524332e-8	4.373911e-4	1.066807e-5
42	8079637	7935692	NM_001100626	ERLIN1	-0.510011	2.740935e-8	4.749218e-4	1.130766e-5
43	8079637	8024497	NM_003249	THOP1	0.509619	2.820099e-8	4.886386e-4	1.136369e-5
44	8079637	7945462	NM_004031	IRF7	0.509323	2.881645e-8	4.993026e-4	1.134779e-5
45	8079637	8145622	ENST00000365541		0.508597	3.037553e-8	5.263169e-4	1.169593e-5
46	8079637	7998267	NM_001005920	JMJD8	0.508555	3.046673e-8	5.278969e-4	1.147602e-5
47	8079637	8143919	NM_001003802	SMARCD3	0.508435	3.073350e-8	5.325193e-4	1.133020e-5
48	8079637	7898673	ENST00000419581		0.508318	3.099548e-8	5.370587e-4	1.118872e-5
49	8079637	7900076	NM_014466	TEKT2	0.507651	3.252724e-8	5.635995e-4	1.150203e-5
50	8079637	7985757	NM_022839	MRPS11	0.507605	3.263637e-8	5.654903e-4	1.130981e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation