[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4901	7999008	NM_032444	BTBD12		BTB (POZ) domain containing 12

Fetching correlation data, please wait...
Getting list of correlations for id 4901.
Getting list of p-values for id 4901.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.130 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7999008	8067543	ENST00000370520		0.661468	1.579511e-14	2.736818e-10	2.736818e-10
2	7999008	7960088	NM_001142641	FBRSL1	0.654622	3.616558e-14	6.266410e-10	3.133205e-10
3	7999008	7967493	NM_006312	NCOR2	0.651200	5.428294e-14	9.405605e-10	3.135202e-10
4	7999008	7901895	NM_032852	ATG4C	-0.624729	1.062997e-12	1.841855e-8	4.604637e-9
5	7999008	8170921	NM_017514	PLXNA3	0.622370	1.366875e-12	2.368384e-8	4.736769e-9
6	7999008	8070269	NM_006052	DSCR3	-0.598863	1.499225e-11	2.597707e-7	4.329511e-8
7	7999008	8005833	NR_003064	PYY2	0.594747	2.235585e-11	3.873598e-7	5.533712e-8
8	7999008	7903972	NM_001688	ATP5F1	-0.590582	3.330599e-11	5.770930e-7	7.213662e-8
9	7999008	7905505	NM_014357	LCE2B	0.588706	3.978143e-11	6.892929e-7	7.658810e-8
10	7999008	7910640	NM_004837	GGPS1	-0.583385	6.544366e-11	1.133942e-6	1.133942e-7
11	7999008	8159616	NM_001144026	NDOR1	0.582534	7.081134e-11	1.226948e-6	1.115407e-7
12	7999008	7991877	NM_005632	SOLH	0.578786	9.991398e-11	1.731210e-6	1.442675e-7
13	7999008	8002218	NM_024939	ESRP2	0.578716	1.005513e-10	1.742253e-6	1.340195e-7
14	7999008	8027439	NM_001136156	ZNF507	-0.577207	1.153634e-10	1.998902e-6	1.427787e-7
15	7999008	7905536	NM_173080	SPRR4	0.576251	1.258055e-10	2.179833e-6	1.453222e-7
16	7999008	8049598	NM_194312	ESPNL	0.575753	1.315945e-10	2.280138e-6	1.425086e-7
17	7999008	8039947	NM_006625	SRSF10	-0.575419	1.356265e-10	2.350000e-6	1.382353e-7
18	7999008	8038707	NM_144505	KLK8	0.575218	1.381150e-10	2.393118e-6	1.329510e-7
19	7999008	8121734	NM_014034	ASF1A	-0.574068	1.531792e-10	2.654136e-6	1.396914e-7
20	7999008	7960117	NM_018663	PXMP2	0.572507	1.761670e-10	3.052445e-6	1.526222e-7
21	7999008	8169519	NM_019045	WDR44	-0.571291	1.963622e-10	3.402367e-6	1.620175e-7
22	7999008	8019090	NM_001080395	AATK	0.570697	2.069989e-10	3.586671e-6	1.630305e-7
23	7999008	8028991	NM_030622	CYP2S1	0.568131	2.597430e-10	4.500567e-6	1.956768e-7
24	7999008	8143296	NM_198508	KLRG2	0.565595	3.244566e-10	5.621860e-6	2.342442e-7
25	7999008	8068551	NM_101395	DYRK1A	-0.564995	3.418792e-10	5.923741e-6	2.369496e-7
26	7999008	7996891	NM_032830	CIRH1A	-0.563545	3.878153e-10	6.719675e-6	2.584490e-7
27	7999008	7975995	BC113929	C14orf178	0.563407	3.924867e-10	6.800616e-6	2.518747e-7
28	7999008	7974566	NM_018229	MUDENG	-0.563244	3.980580e-10	6.897151e-6	2.463268e-7
29	7999008	8044965	NM_004622	TSN	-0.562596	4.210176e-10	7.294972e-6	2.515508e-7
30	7999008	8034827	NM_005716	GIPC1	0.562239	4.342426e-10	7.524121e-6	2.508040e-7
31	7999008	7922656	NM_032360	ACBD6	-0.562224	4.348016e-10	7.533807e-6	2.430260e-7
32	7999008	8038540	NM_004977	KCNC3	0.561957	4.449376e-10	7.709434e-6	2.409198e-7
33	7999008	8150906	NM_017813	IMPAD1	-0.561424	4.658556e-10	8.071880e-6	2.446024e-7
34	7999008	8018288	NM_006356	ATP5H	-0.560463	5.059705e-10	8.766951e-6	2.578515e-7
35	7999008	8023549	NM_013435	RAX	0.559656	5.422161e-10	9.394978e-6	2.684280e-7
36	7999008	7940884	NM_032344	NUDT22	0.559122	5.675681e-10	9.834252e-6	2.731737e-7
37	7999008	8086372	NM_017886	ULK4	-0.558096	6.194776e-10	1.073369e-5	2.900997e-7
38	7999008	8101340	NR_003249	HNRPDL	-0.557764	6.372432e-10	1.104151e-5	2.905661e-7
39	7999008	8161988	NM_013438	UBQLN1	-0.556997	6.801873e-10	1.178561e-5	3.021950e-7
40	7999008	7954777	NM_032834	ALG10	-0.556941	6.833968e-10	1.184122e-5	2.960304e-7
41	7999008	7901418	NM_152265	BTF3L4	-0.556047	7.372118e-10	1.277367e-5	3.115529e-7
42	7999008	7974725	NM_016475	JKAMP	-0.555964	7.423983e-10	1.286354e-5	3.062747e-7
43	7999008	7947396	NM_001326	CSTF3	-0.555516	7.710569e-10	1.336010e-5	3.107001e-7
44	7999008	8018038	NM_018672	ABCA5	-0.555467	7.742505e-10	1.341544e-5	3.048963e-7
45	7999008	8042588	NM_005791	MPHOSPH10	-0.554047	8.726195e-10	1.511988e-5	3.359973e-7
46	7999008	8151066	NM_018120	ARMC1	-0.553926	8.814940e-10	1.527365e-5	3.320358e-7
47	7999008	7913712	NM_006625	SRSF10	-0.553830	8.886719e-10	1.539802e-5	3.276174e-7
48	7999008	7931187	NM_004725	BUB3	-0.553735	8.957626e-10	1.552088e-5	3.233516e-7
49	7999008	7996164	NM_199046	TEPP	0.552583	9.865978e-10	1.709478e-5	3.488731e-7
50	7999008	8145586	NM_018091	ELP3	-0.552405	1.001370e-9	1.735073e-5	3.470146e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation