[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3395	8151066	NM_018120	ARMC1		armadillo repeat containing 1

Fetching correlation data, please wait...
Getting list of correlations for id 3395.
Getting list of p-values for id 3395.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.133 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8151066	8136631	NM_003143	SSBP1	0.827933	1.270655e-27	2.201664e-23	2.201664e-23
2	8151066	8063283	NM_001316	CSE1L	0.822424	5.548014e-27	9.613044e-23	4.806522e-23
3	8151066	8078600	NM_006756	TCEA1	0.821190	7.665687e-27	1.328234e-22	4.427445e-23
4	8151066	8150818	NM_006756	TCEA1	0.819918	1.066739e-26	1.848339e-22	4.620847e-23
5	8151066	8162850	NM_017746	TEX10	0.817975	1.759027e-26	3.047867e-22	6.095733e-23
6	8151066	8111629	NM_153485	NUP155	0.814884	3.848844e-26	6.668892e-22	1.111482e-22
7	8151066	7914764	NM_007167	ZMYM6	0.814701	4.030182e-26	6.983097e-22	9.975853e-23
8	8151066	8043251	NM_017952	PTCD3	0.813796	5.054007e-26	8.757079e-22	1.094635e-22
9	8151066	8047815	NM_001136194	FASTKD2	0.812801	6.472140e-26	1.121428e-21	1.246031e-22
10	8151066	7929116	NM_006413	RPP30	0.808538	1.837450e-25	3.183750e-21	3.183750e-22
11	8151066	8135235	NM_004279	PMPCB	0.807768	2.212238e-25	3.833145e-21	3.484678e-22
12	8151066	7950644	NM_004549	NDUFC2	0.806362	3.098948e-25	5.369548e-21	4.474623e-22
13	8151066	8041149	NM_015131	WDR43	0.806315	3.133827e-25	5.429983e-21	4.176910e-22
14	8151066	7939137	NM_006360	EIF3M	0.806177	3.238359e-25	5.611104e-21	4.007932e-22
15	8151066	8089584	NM_015412	C3orf17	0.803747	5.756771e-25	9.974757e-21	6.649838e-22
16	8151066	8123695	NM_206836	PECI	0.802455	7.791609e-25	1.350052e-20	8.437826e-22
17	8151066	8152465	NM_003756	EIF3H	0.802426	7.843246e-25	1.358999e-20	7.994113e-22
18	8151066	7928300	NM_173473	ANAPC16	0.802206	8.256770e-25	1.430650e-20	7.948058e-22
19	8151066	8107458	NM_016144	COMMD10	0.802157	8.352066e-25	1.447162e-20	7.616644e-22
20	8151066	8092564	NM_004593	TRA2B	0.801801	9.072973e-25	1.572074e-20	7.860370e-22
21	8151066	8027650	NM_005499	UBA2	0.801276	1.024967e-24	1.775961e-20	8.456957e-22
22	8151066	8027416	NM_003796	C19orf2	0.797712	2.321846e-24	4.023062e-20	1.828665e-21
23	8151066	8129706	NM_006620	HBS1L	0.797591	2.386719e-24	4.135467e-20	1.798029e-21
24	8151066	8041257	NM_017964	SLC30A6	0.796844	2.826496e-24	4.897470e-20	2.040612e-21
25	8151066	7920317	NM_004515	ILF2	0.795406	3.907432e-24	6.770407e-20	2.708163e-21
26	8151066	7969935	NM_000123	ERCC5	0.795222	4.071428e-24	7.054563e-20	2.713294e-21
27	8151066	8039947	NM_006625	SRSF10	0.793968	5.387769e-24	9.335387e-20	3.457551e-21
28	8151066	7925364	NM_018072	HEATR1	0.793466	6.023407e-24	1.043676e-19	3.727413e-21
29	8151066	8144894	NM_018142	INTS10	0.793398	6.114013e-24	1.059375e-19	3.653017e-21
30	8151066	8107282	NM_139281	WDR36	0.792555	7.368547e-24	1.276748e-19	4.255827e-21
31	8151066	8109368	NM_005754	G3BP1	0.792397	7.629215e-24	1.321914e-19	4.264239e-21
32	8151066	7973902	NM_003136	SRP54	0.790563	1.140960e-23	1.976941e-19	6.177942e-21
33	8151066	7985044	NM_173469	UBE2Q2	0.790088	1.265627e-23	2.192951e-19	6.645307e-21
34	8151066	8052562	NM_006430	CCT4	0.789867	1.328031e-23	2.301079e-19	6.767880e-21
35	8151066	8119080	NM_003017	SRSF3	0.789445	1.455441e-23	2.521842e-19	7.205262e-21
36	8151066	8096808	NM_017918	CCDC109B	0.789209	1.531873e-23	2.654277e-19	7.372990e-21
37	8151066	8163795	NM_005047	PSMD5	0.789079	1.575822e-23	2.730426e-19	7.379530e-21
38	8151066	8088219	NM_001112736	C3orf63	0.788752	1.691355e-23	2.930610e-19	7.712132e-21
39	8151066	7918345	NM_002790	PSMA5	0.788396	1.826501e-23	3.164779e-19	8.114817e-21
40	8151066	7953878	NM_001004419	CLEC2D	0.788063	1.962431e-23	3.400304e-19	8.500759e-21
41	8151066	8171516	NM_002893	RBBP7	0.787945	2.013084e-23	3.488071e-19	8.507491e-21
42	8151066	7912852	NM_001412	EIF1AX	0.787483	2.222928e-23	3.851668e-19	9.170637e-21
43	8151066	7901418	NM_152265	BTF3L4	0.786774	2.588203e-23	4.484579e-19	1.042925e-20
44	8151066	7924190	NM_144567	ANGEL2	0.786519	2.732969e-23	4.735416e-19	1.076231e-20
45	8151066	8128472	NM_006828	ASCC3	0.786361	2.827022e-23	4.898381e-19	1.088529e-20
46	8151066	7957633	NM_006838	METAP2	0.785878	3.133372e-23	5.429194e-19	1.180260e-20
47	8151066	8161988	NM_013438	UBQLN1	0.785827	3.167450e-23	5.488241e-19	1.167711e-20
48	8151066	8111892	NM_000436	OXCT1	0.785260	3.572996e-23	6.190930e-19	1.289777e-20
49	8151066	7923798	NM_022731	NUCKS1	0.785024	3.756905e-23	6.509588e-19	1.328487e-20
50	8151066	7913712	NM_006625	SRSF10	0.784955	3.811653e-23	6.604452e-19	1.320890e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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