[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5935	8087825	NM_032750	ABHD14B		abhydrolase domain containing 14B

Fetching correlation data, please wait...
Getting list of correlations for id 5935.
Getting list of p-values for id 5935.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.135 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8087825	8006788	NM_005937	MLLT6	0.597069	1.785652e-11	3.094000e-7	3.094000e-7
2	8087825	8013923	NM_001085454	GIT1	0.582889	6.852385e-11	1.187313e-6	5.936564e-7
3	8087825	8025788	NM_001128849	SMARCA4	0.579786	9.118562e-11	1.579973e-6	5.266577e-7
4	8087825	8013860	NM_078471	MYO18A	0.561043	4.813858e-10	8.340972e-6	2.085243e-6
5	8087825	8071823	NM_012295	CABIN1	0.559486	5.501538e-10	9.532516e-6	1.906503e-6
6	8087825	8076137	NM_015374	SUN2	0.542642	2.235637e-9	3.873689e-5	6.456148e-6
7	8087825	7920912	NM_020131	UBQLN4	0.537419	3.400048e-9	5.891263e-5	8.416091e-6
8	8087825	8010212	NM_152468	TMC8	0.532845	4.879507e-9	8.454722e-5	1.056840e-5
9	8087825	7952116	NM_182557	BCL9L	0.531144	5.573805e-9	9.657732e-5	1.073081e-5
10	8087825	8066641	NM_022095	ZNF335	0.527480	7.404492e-9	1.282976e-4	1.282976e-5
11	8087825	8037389	NM_019108	C19orf61	0.527149	7.595739e-9	1.316114e-4	1.196467e-5
12	8087825	8141180	NM_015395	TECPR1	0.523347	1.016006e-8	1.760433e-4	1.467027e-5
13	8087825	8080320	NM_007184	NISCH	0.512513	2.282668e-8	3.955179e-4	3.042445e-5
14	8087825	7968890	NM_003646	DGKZ	0.508488	3.061668e-8	5.304952e-4	3.789251e-5
15	8087825	8077595	NM_001003694	BRPF1	0.508354	3.091464e-8	5.356580e-4	3.571053e-5
16	8087825	8131253	NM_001037165	FOXK1	0.508304	3.102632e-8	5.375930e-4	3.359956e-5
17	8087825	8040843	NM_004341	CAD	0.507460	3.297981e-8	5.714412e-4	3.361419e-5
18	8087825	hsa-miR-768-3p			0.506216	3.607370e-8	6.250491e-4	3.472495e-5
19	8087825	7987230	NM_153613	LPCAT4	0.505728	3.736175e-8	6.473670e-4	3.407195e-5
20	8087825	7999120	NM_024535	CORO7	0.505228	3.872695e-8	6.710218e-4	3.355109e-5
21	8087825	8018937	NM_025090	USP36	0.503286	4.449777e-8	7.710129e-4	3.671490e-5
22	8087825	8118734	NM_002224	ITPR3	0.501607	5.013629e-8	8.687115e-4	3.948689e-5
23	8087825	8065798	NM_178026	GGT7	0.500185	5.544238e-8	9.606502e-4	4.176740e-5
24	8087825	8137739	NM_001080453	INTS1	0.493445	8.875854e-8	1.537919e-3	6.407997e-5
25	8087825	8037679	NM_004943	DMWD	0.493393	8.907631e-8	1.543425e-3	6.173701e-5
26	8087825	7994386	NM_007245	ATXN2L	0.493138	9.066313e-8	1.570920e-3	6.042000e-5
27	8087825	8118945	NM_006238	PPARD	0.492380	9.552190e-8	1.655108e-3	6.130029e-5
28	8087825	7949206	NM_130802	MEN1	0.492167	9.693343e-8	1.679566e-3	5.998449e-5
29	8087825	8148824	NM_005526	HSF1	0.488265	1.265693e-7	2.193066e-3	7.562295e-5
30	8087825	7963092	NM_175736	FMNL3	0.486986	1.380368e-7	2.391763e-3	7.972543e-5
31	8087825	8085431	NM_024923	NUP210	0.483654	1.727330e-7	2.992945e-3	9.654660e-5
32	8087825	7955331	NM_003076	SMARCD1	0.479484	2.279447e-7	3.949597e-3	1.234249e-4
33	8087825	8071466	NM_006767	LZTR1	0.477231	2.643724e-7	4.580781e-3	1.388115e-4
34	8087825	8149986	NM_018660	ZNF395	0.476566	2.761581e-7	4.784991e-3	1.407350e-4
35	8087825	8030403	NM_020719	PRR12	0.476109	2.845304e-7	4.930058e-3	1.408588e-4
36	8087825	8003639	BC092513	WDR81	0.475701	2.922286e-7	5.063445e-3	1.406513e-4
37	8087825	8060705	NM_020746	MAVS	0.475594	2.942732e-7	5.098871e-3	1.378073e-4
38	8087825	8009796	NM_014738	KIAA0195	0.475079	3.043208e-7	5.272967e-3	1.387623e-4
39	8087825	8016194	NM_003954	MAP3K14	0.474394	3.181895e-7	5.513269e-3	1.413659e-4
40	8087825	7900710	NM_001012961	C1orf84	0.472819	3.523976e-7	6.105992e-3	1.526498e-4
41	8087825	8004699	NM_001005273	CHD3	0.472593	3.575970e-7	6.196083e-3	1.511240e-4
42	8087825	7959995	NM_015409	EP400	0.472457	3.607453e-7	6.250634e-3	1.488246e-4
43	8087825	7937415	NM_020901	PHRF1	0.470392	4.120455e-7	7.139512e-3	1.660352e-4
44	8087825	8029147	NM_199002	ARHGEF1	0.470046	4.213117e-7	7.300068e-3	1.659106e-4
45	8087825	7996685	NM_014329	EDC4	0.469323	4.412642e-7	7.645784e-3	1.699063e-4
46	8087825	8139468	NM_004749	TBRG4	0.469008	4.502286e-7	7.801110e-3	1.695894e-4
47	8087825	8028286	NM_015073	SIPA1L3	0.468192	4.743195e-7	8.218535e-3	1.748624e-4
48	8087825	8153568	NM_201384	PLEC	0.468149	4.756239e-7	8.241135e-3	1.716903e-4
49	8087825	8134821	NM_019606	MEPCE	0.467877	4.839114e-7	8.384732e-3	1.711170e-4
50	8087825	7977373	NM_004689	MTA1	0.467649	4.909844e-7	8.507286e-3	1.701457e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation