Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5243	7959473	NM_003677	DENR		density-regulated protein

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7959473	7973902	NM_003136	SRP54		0.847979	3.693419e-30	6.399586e-26	6.399586e-26
2	7959473	8042270	NM_001001521	UGP2		0.847178	4.739367e-30	8.211902e-26	4.105951e-26
3	7959473	7980463	NM_012245	SNW1		0.843945	1.277209e-29	2.213020e-25	7.376732e-26
4	7959473	8001211	NM_030790	ITFG1		0.840480	3.607067e-29	6.249965e-25	1.562491e-25
5	7959473	8006638	NM_024835	GGNBP2		0.835806	1.407827e-28	2.439343e-24	4.878685e-25
6	7959473	8055672	NM_015702	MMADHC		0.834897	1.825851e-28	3.163652e-24	5.272753e-25
7	7959473	8091048	NR_023350	COPB2		0.834114	2.280863e-28	3.952052e-24	5.645788e-25
8	7959473	7908437	NM_024529	CDC73		0.833214	2.941442e-28	5.096637e-24	6.370796e-25
9	7959473	7967304	NM_198261	RSRC2		0.831689	4.511456e-28	7.817000e-24	8.685555e-25
10	7959473	7903519	NM_018061	PRPF38B		0.831298	5.031354e-28	8.717827e-24	8.717827e-25
11	7959473	7967900	NM_003453	ZMYM2		0.829776	7.667742e-28	1.328590e-23	1.207809e-24
12	7959473	7969271	NM_001130912	SUGT1		0.829759	7.704479e-28	1.334955e-23	1.112463e-24
13	7959473	8042601	NM_014497	ZNF638		0.827355	1.486645e-27	2.575909e-23	1.981469e-24
14	7959473	8023195	NM_005901	SMAD2		0.827255	1.527523e-27	2.646739e-23	1.890528e-24
15	7959473	7946728	NM_148976	PSMA1		0.827077	1.602892e-27	2.777331e-23	1.851554e-24
16	7959473	8082607	NM_014382	ATP2C1		0.827076	1.603217e-27	2.777894e-23	1.736184e-24
17	7959473	7932911	NM_004521	KIF5B		0.826860	1.699779e-27	2.945207e-23	1.732475e-24
18	7959473	8082940	NM_015396	ARMC8		0.825958	2.168151e-27	3.756756e-23	2.087087e-24
19	7959473	7989253	NM_024755	SLTM		0.825905	2.199318e-27	3.810758e-23	2.005662e-24
20	7959473	8146243	NM_032410	HOOK3		0.824408	3.282296e-27	5.687233e-23	2.843617e-24
21	7959473	8146216	NM_001135694	VDAC3		0.824371	3.314750e-27	5.743468e-23	2.734985e-24
22	7959473	8132070	NM_002047	GARS		0.823962	3.695692e-27	6.403526e-23	2.910693e-24
23	7959473	7984641	NM_005744	ARIH1		0.823760	3.899345e-27	6.756396e-23	2.937563e-24
24	7959473	7933947	NM_022079	HERC4		0.823746	3.913196e-27	6.780395e-23	2.825165e-24
25	7959473	8150797	NM_015941	ATP6V1H		0.822838	4.975830e-27	8.621620e-23	3.448648e-24
26	7959473	8150714	NM_052937	PCMTD1		0.821907	6.354361e-27	1.101020e-22	4.234693e-24
27	7959473	7964250	NM_006601	PTGES3		0.820752	8.592513e-27	1.488825e-22	5.514166e-24
28	7959473	7995552	NM_015247	CYLD		0.820704	8.700047e-27	1.507457e-22	5.383775e-24
29	7959473	7957177	NM_014999	RAB21		0.819887	1.075556e-26	1.863616e-22	6.426262e-24
30	7959473	8132292	NM_001788	SEPT7		0.819704	1.127581e-26	1.953760e-22	6.512534e-24
31	7959473	8090898	NM_005862	STAG1		0.819475	1.196188e-26	2.072634e-22	6.685917e-24
32	7959473	7934812	NM_015045	WAPAL		0.818560	1.513962e-26	2.623242e-22	8.197630e-24
33	7959473	8152041	NM_183419	RNF19A		0.818186	1.666450e-26	2.887457e-22	8.749870e-24
34	7959473	8136631	NM_003143	SSBP1		0.818175	1.671204e-26	2.895695e-22	8.516749e-24
35	7959473	8021015	NM_002647	PIK3C3		0.818137	1.687515e-26	2.923958e-22	8.354164e-24
36	7959473	8109732	NM_013283	MAT2B		0.817817	1.831135e-26	3.172808e-22	8.813355e-24
37	7959473	8095163	NM_001024924	EXOC1		0.817702	1.885762e-26	3.267460e-22	8.830974e-24
38	7959473	7967420	NM_018183	SBNO1		0.817231	2.126430e-26	3.684466e-22	9.695962e-24
39	7959473	7954940	NM_016488	PPHLN1		0.816617	2.486077e-26	4.307625e-22	1.104519e-23
40	7959473	7975113	NM_145165	CHURC1		0.816549	2.528822e-26	4.381689e-22	1.095422e-23
41	7959473	7988713	NM_017672	TRPM7		0.815883	2.993348e-26	5.186574e-22	1.265018e-23
42	7959473	8132943	NM_001762	CCT6A		0.815609	3.207346e-26	5.557368e-22	1.323183e-23
43	7959473	8160622	NM_018225	SMU1		0.815060	3.682676e-26	6.380972e-22	1.483947e-23
44	7959473	8150103	NM_002095	GTF2E2		0.814974	3.763769e-26	6.521482e-22	1.482155e-23
45	7959473	8129045	NM_001527	HDAC2		0.814540	4.195974e-26	7.270365e-22	1.615637e-23
46	7959473	7970546	NM_152726	EFHA1		0.814364	4.385180e-26	7.598201e-22	1.651783e-23
47	7959473	7971820	NM_016075	VPS36		0.814196	4.573841e-26	7.925095e-22	1.686190e-23
48	7959473	8100615	NM_018227	UBA6		0.813867	4.965057e-26	8.602954e-22	1.792282e-23
49	7959473	7939137	NM_006360	EIF3M		0.812862	6.374762e-26	1.104555e-21	2.254194e-23
50	7959473	8115022	NM_001025105	CSNK1A1		0.812818	6.445114e-26	1.116745e-21	2.233490e-23

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.