[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3851	8048505	NR_026909	STK16		serine/threonine kinase 16

Fetching correlation data, please wait...
Getting list of correlations for id 3851.
Getting list of p-values for id 3851.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.113 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8048505	7898663	NM_032409	PINK1	0.600286	1.304159e-11	2.259716e-7	2.259716e-7
2	8048505	8141717	NM_016068	FIS1	0.596214	1.940208e-11	3.361798e-7	1.680899e-7
3	8048505	8036913	NM_000713	BLVRB	0.587410	4.494704e-11	7.787973e-7	2.595991e-7
4	8048505	8061958	NM_176812	CHMP4B	0.583961	6.203763e-11	1.074926e-6	2.687315e-7
5	8048505	7940996	NM_012094	PRDX5	0.571756	1.883845e-10	3.264139e-6	6.528277e-7
6	8048505	8164521	NM_020145	SH3GLB2	0.570296	2.144981e-10	3.716609e-6	6.194348e-7
7	8048505	7949746	NM_021173	POLD4	0.569878	2.226072e-10	3.857115e-6	5.510164e-7
8	8048505	8005191	BC027986	NCRNA00188	0.568738	2.462143e-10	4.266154e-6	5.332693e-7
9	8048505	7910241	NM_000858	GUK1	0.567995	2.628733e-10	4.554806e-6	5.060895e-7
10	8048505	7966749	NM_017899	TESC	0.562762	4.150355e-10	7.191319e-6	7.191319e-7
11	8048505	8031152	NM_001013	RPS9	0.561328	4.697201e-10	8.138841e-6	7.398946e-7
12	8048505	8115210	NM_006058	TNIP1	0.553630	9.037451e-10	1.565919e-5	1.304933e-6
13	8048505	7995237	NM_016633	AHSP	0.553535	9.109413e-10	1.578388e-5	1.214145e-6
14	8048505	8067288	NM_001001977	ATP5E	0.551276	1.100283e-9	1.906460e-5	1.361757e-6
15	8048505	7968270	NR_002162	ATP5EP2	0.550337	1.189603e-9	2.061225e-5	1.374150e-6
16	8048505	8026024	NM_004317	ASNA1	0.541432	2.465154e-9	4.271372e-5	2.669608e-6
17	8048505	7946041	NM_000519	HBD	0.540648	2.625820e-9	4.549758e-5	2.676328e-6
18	8048505	8122259	ENST00000384518		-0.538201	3.194589e-9	5.535264e-5	3.075147e-6
19	8048505	8032804	NM_003025	SH3GL1	0.538077	3.226180e-9	5.590002e-5	2.942106e-6
20	8048505	7928401	NM_203298	CHCHD1	0.535039	4.105906e-9	7.114303e-5	3.557151e-6
21	8048505	8025414	NM_004218	RAB11B	0.534952	4.134150e-9	7.163242e-5	3.411067e-6
22	8048505	7998222	NM_006428	MRPL28	0.534599	4.251074e-9	7.365836e-5	3.348107e-6
23	8048505	7974461	NR_003225	LGALS3	0.533973	4.465755e-9	7.737814e-5	3.364267e-6
24	8048505	8025183	NM_020533	MCOLN1	0.533841	4.512561e-9	7.818914e-5	3.257881e-6
25	8048505	8034075	NM_001800	CDKN2D	0.532371	5.064109e-9	8.774582e-5	3.509833e-6
26	8048505	7996455	NM_001950	E2F4	0.530212	5.993504e-9	1.038494e-4	3.994209e-6
27	8048505	8148737	NM_032272	MAF1	0.528720	6.728576e-9	1.165860e-4	4.318002e-6
28	8048505	7990361	NM_032907	UBL7	0.527459	7.416339e-9	1.285029e-4	4.589389e-6
29	8048505	8153474	NM_003313	TSTA3	0.527377	7.463593e-9	1.293217e-4	4.459368e-6
30	8048505	8053417	NM_001747	CAPG	0.527311	7.501541e-9	1.299792e-4	4.332640e-6
31	8048505	8085263	NM_018447	TMEM111	0.526018	8.285488e-9	1.435626e-4	4.631053e-6
32	8048505	8032284	NM_006830	UQCR11	0.525971	8.314836e-9	1.440712e-4	4.502224e-6
33	8048505	8093957	NM_018366	CNO	0.525144	8.858559e-9	1.534923e-4	4.651281e-6
34	8048505	7998852	NM_007108	TCEB2	0.523627	9.945778e-9	1.723305e-4	5.068544e-6
35	8048505	8080084	NM_006010	MANF	0.521851	1.138003e-8	1.971818e-4	5.633764e-6
36	8048505	8075306	ENST00000384724		-0.516937	1.645690e-8	2.851488e-4	7.920800e-6
37	8048505	8023914	NM_025078	PQLC1	0.514660	1.948721e-8	3.376549e-4	9.125807e-6
38	8048505	8119153	NM_004373	COX6A1	0.511637	2.433957e-8	4.217317e-4	1.109820e-5
39	8048505	8016508	NM_007241	SNF8	0.509879	2.767331e-8	4.794955e-4	1.229476e-5
40	8048505	8023968	NM_004359	CDC34	0.506781	3.463493e-8	6.001195e-4	1.500299e-5
41	8048505	7950119	BC001706	C11orf59	0.506770	3.466306e-8	6.006068e-4	1.464895e-5
42	8048505	7959153	NM_004373	COX6A1	0.506055	3.649467e-8	6.323431e-4	1.505579e-5
43	8048505	7935865	NM_013274	POLL	0.505531	3.789367e-8	6.565836e-4	1.526939e-5
44	8048505	8155250	NM_012203	GRHPR	0.501326	5.114625e-8	8.862110e-4	2.014116e-5
45	8048505	7955768	NM_002624	PFDN5	0.501317	5.117940e-8	8.867855e-4	1.970634e-5
46	8048505	8024436	NM_004152	OAZ1	0.501226	5.150802e-8	8.924795e-4	1.940173e-5
47	8048505	8023175	NM_016097	IER3IP1	0.501207	5.157977e-8	8.937227e-4	1.901538e-5
48	8048505	8159609	NM_003731	SSNA1	0.501150	5.178730e-8	8.973186e-4	1.869414e-5
49	8048505	8165309	NM_003792	EDF1	0.500723	5.337584e-8	9.248431e-4	1.887435e-5
50	8048505	8037847	NM_004069	AP2S1	0.499894	5.659250e-8	9.805782e-4	1.961156e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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