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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
1262 8007420 NM_003734 AOC3 link to infopage amine oxidase, copper containing 3 (vascular adhesion protein 1)
12084 8007427 NM_003734 AOC3 link to infopage amine oxidase, copper containing 3 (vascular adhesion protein 1)

Fetching correlation data, please wait...
Getting list of correlations for id 1262.
Getting list of p-values for id 1262.
1 of 2 done.
Getting list of correlations for id 12084.
Getting list of p-values for id 12084.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.211 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8007427 8086222 NM_001099404 SCN5A link to infopage 0.742566 1.233111e-19 4.273223e-15 4.273223e-15
2 8007427 8029117 NM_001040283 DMRTC2 link to infopage 0.739915 1.938895e-19 6.719046e-15 3.359523e-15
3 8007427 8066757 NM_022829 SLC13A3 link to infopage 0.735421 4.125352e-19 1.429600e-14 4.765332e-15
4 8007427 7955305 NM_001652 AQP6 link to infopage 0.727943 1.401315e-18 4.856115e-14 1.214029e-14
5 8007427 7967641 NM_133448 TMEM132D link to infopage 0.726734 1.701137e-18 5.895121e-14 1.179024e-14
6 8007427 8060101 AK092442 PP14571 link to infopage 0.725317 2.132349e-18 7.389442e-14 1.231574e-14
7 8007427 8159036 NM_139025 ADAMTS13 link to infopage 0.720665 4.434377e-18 1.536689e-13 2.195270e-14
8 8007427 8156415 NM_006648 WNK2 link to infopage 0.720366 4.645688e-18 1.609917e-13 2.012396e-14
9 8007427 8069037 NM_000383 AIRE link to infopage 0.718275 6.421896e-18 2.225444e-13 2.472715e-14
10 8007427 8055038 NM_017980 LIMS2 link to infopage 0.717209 7.566552e-18 2.622113e-13 2.622113e-14
11 8007427 8139367 NM_013389 NPC1L1 link to infopage 0.715832 9.341111e-18 3.237069e-13 2.942790e-14
12 8007427 8008228 NM_138281 DLX4 link to infopage 0.715806 9.377527e-18 3.249688e-13 2.708074e-14
13 8007427 7899075 NM_004455 EXTL1 link to infopage 0.715076 1.048087e-17 3.632041e-13 2.793878e-14
14 8007427 7937483 NR_002585 SNORA52 link to infopage 0.712969 1.441797e-17 4.996402e-13 3.568859e-14
15 8007427 8060126 NM_198998 AQP12A link to infopage 0.707560 3.227951e-17 1.118614e-12 7.457427e-14
16 8007427 8151644 NM_016033 FAM82B link to infopage -0.707298 3.355013e-17 1.162646e-12 7.266539e-14
17 8007427 7955184 NM_006262 PRPH link to infopage 0.705871 4.135959e-17 1.433275e-12 8.431030e-14
18 8007427 7995310 ENST00000319817 link to infopage 0.705382 4.442264e-17 1.539422e-12 8.552345e-14
19 8007427 8070786 NM_198688 KRTAP10-6 link to infopage 0.704226 5.257079e-17 1.821788e-12 9.588359e-14
20 8007427 8087145 NM_001407 CELSR3 link to infopage 0.701457 7.841930e-17 2.717542e-12 1.358771e-13
21 8007427 7998015 NM_032451 SPIRE2 link to infopage 0.699579 1.025912e-16 3.555194e-12 1.692950e-13
22 8007427 7925504 NM_001004343 MAP1LC3C link to infopage 0.699578 1.026004e-16 3.555515e-12 1.616143e-13
23 8007427 7959761 NM_181709 FAM101A link to infopage 0.697522 1.373728e-16 4.760516e-12 2.069790e-13
24 8007427 7920027 NM_007185 CELF3 link to infopage 0.697490 1.379930e-16 4.782008e-12 1.992503e-13
25 8007427 8107897 NM_003687 PDLIM4 link to infopage 0.697262 1.425036e-16 4.938321e-12 1.975328e-13
26 8007427 7908812 NM_004767 GPR37L1 link to infopage 0.695639 1.790626e-16 6.205236e-12 2.386629e-13
27 8007427 8086908 NM_001130082 PLXNB1 link to infopage 0.695204 1.902949e-16 6.594479e-12 2.442400e-13
28 8007427 8112072 NM_021147 CCNO link to infopage 0.694597 2.071603e-16 7.178934e-12 2.563905e-13
29 8007427 8120698 NM_133645 MTO1 link to infopage -0.694366 2.139551e-16 7.414400e-12 2.556690e-13
30 8007427 8151619 NR_003594 REXO1L2P link to infopage 0.693457 2.428156e-16 8.414531e-12 2.804844e-13
31 8007427 8088425 NM_138805 FAM3D link to infopage 0.693413 2.443129e-16 8.466419e-12 2.731103e-13
32 8007427 7952893 BC024764 IQSEC3 link to infopage 0.688249 4.969838e-16 1.722248e-11 5.382024e-13
33 8007427 8004842 NM_173728 ARHGEF15 link to infopage 0.687626 5.408683e-16 1.874325e-11 5.679773e-13
34 8007427 7903632 NM_001408 CELSR2 link to infopage 0.687161 5.760962e-16 1.996404e-11 5.871776e-13
35 8007427 8064242 NR_027686 NCRNA00176 link to infopage 0.686988 5.897209e-16 2.043619e-11 5.838911e-13
36 8007427 8137151 NM_198455 SSPO link to infopage 0.686881 5.983398e-16 2.073487e-11 5.759685e-13
37 8007427 8054020 BC038583 FAM178B link to infopage 0.685337 7.369830e-16 2.553941e-11 6.902543e-13
38 8007427 8163599 NM_015404 DFNB31 link to infopage 0.685298 7.407636e-16 2.567042e-11 6.755374e-13
39 8007427 8001449 NM_024336 IRX3 link to infopage 0.685043 7.666362e-16 2.656701e-11 6.812054e-13
40 8007427 8074063 NM_024866 ADM2 link to infopage 0.684995 7.716055e-16 2.673922e-11 6.684804e-13
41 8007427 8151603 NR_003594 REXO1L2P link to infopage 0.684944 7.769339e-16 2.692387e-11 6.566797e-13
42 8007427 8151623 NR_003594 REXO1L2P link to infopage 0.684944 7.769339e-16 2.692387e-11 6.410445e-13
43 8007427 8151607 NR_003594 REXO1L2P link to infopage 0.684944 7.769339e-16 2.692387e-11 6.261365e-13
44 8007427 7980152 NM_000428 LTBP2 link to infopage 0.684071 8.734341e-16 3.026799e-11 6.879088e-13
45 8007427 8005328 NM_016239 MYO15A link to infopage 0.683973 8.849168e-16 3.066591e-11 6.814646e-13
46 8007427 7896865 NM_153254 TTLL10 link to infopage 0.682545 1.070553e-15 3.709896e-11 8.064991e-13
47 8007427 8003939 NM_003963 TM4SF5 link to infopage 0.682531 1.072620e-15 3.717058e-11 7.908634e-13
48 8007427 8119435 NM_004828 NCR2 link to infopage 0.682084 1.138269e-15 3.944558e-11 8.217829e-13
49 8007427 7963142 NM_012306 FAIM2 link to infopage 0.681951 1.158546e-15 4.014825e-11 8.193521e-13
50 8007427 8087116 NM_001008269 TMEM89 link to infopage 0.681552 1.221426e-15 4.232731e-11 8.465462e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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