[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5704	7941662	NM_001104	ACTN3		actinin, alpha 3

Fetching correlation data, please wait...
Getting list of correlations for id 5704.
Getting list of p-values for id 5704.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.139 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7941662	8095048	NM_030917	FIP1L1	-0.776668	2.124432e-22	3.681003e-18	3.681003e-18
2	7941662	7966542	NM_004658	RASAL1	0.763133	3.017029e-21	5.227605e-17	2.613803e-17
3	7941662	8100714	NM_001031732	YTHDC1	-0.762073	3.686232e-21	6.387135e-17	2.129045e-17
4	7941662	7913300	NM_016287	HP1BP3	-0.756850	9.744694e-21	1.688463e-16	4.221158e-17
5	7941662	8092201	NM_024665	TBL1XR1	-0.756697	1.002205e-20	1.736521e-16	3.473042e-17
6	7941662	8106534	NM_001114394	PAPD4	-0.744958	8.156424e-20	1.413264e-15	2.355439e-16
7	7941662	7917156	NM_003902	FUBP1	-0.744509	8.818256e-20	1.527939e-15	2.182770e-16
8	7941662	8017776	NM_014877	HELZ	-0.742859	1.172506e-19	2.031600e-15	2.539500e-16
9	7941662	8003758	NM_000430	PAFAH1B1	-0.742483	1.250747e-19	2.167169e-15	2.407966e-16
10	7941662	8128356	NM_012160	FBXL4	-0.738053	2.656110e-19	4.602242e-15	4.602242e-16
11	7941662	8001496	NM_007006	NUDT21	-0.737686	2.824947e-19	4.894785e-15	4.449805e-16
12	7941662	7938669	NM_014267	C11orf58	-0.737018	3.160202e-19	5.475682e-15	4.563068e-16
13	7941662	8083282	NM_032383	HPS3	-0.733667	5.515348e-19	9.556444e-15	7.351111e-16
14	7941662	8079021	NM_001904	CTNNB1	-0.732703	6.464814e-19	1.120158e-14	8.001131e-16
15	7941662	8095269	NM_000938	POLR2B	-0.732230	6.985569e-19	1.210390e-14	8.069264e-16
16	7941662	8104463	NM_005885	MARCH6	-0.730768	8.871303e-19	1.537131e-14	9.607067e-16
17	7941662	8138670	NM_031243	HNRNPA2B1	-0.730168	9.779668e-19	1.694523e-14	9.967783e-16
18	7941662	7936762	NM_001001976	ATE1	-0.729276	1.130115e-18	1.958151e-14	1.087862e-15
19	7941662	8098512	NM_021942	C4orf41	-0.728308	1.321270e-18	2.289364e-14	1.204929e-15
20	7941662	7981249	NM_032233	SETD3	-0.726539	1.754956e-18	3.040811e-14	1.520406e-15
21	7941662	8108134	NM_014829	DDX46	-0.725991	1.915389e-18	3.318795e-14	1.580379e-15
22	7941662	8067506	BC137326	C20orf151	0.725952	1.927304e-18	3.339440e-14	1.517927e-15
23	7941662	8088348	NM_152678	FAM116A	-0.724592	2.392323e-18	4.145179e-14	1.802252e-15
24	7941662	8096556	NM_015143	METAP1	-0.723670	2.767963e-18	4.796049e-14	1.998354e-15
25	7941662	8017235	NM_006380	APPBP2	-0.723517	2.835454e-18	4.912991e-14	1.965196e-15
26	7941662	8100902	NM_032217	ANKRD17	-0.722632	3.259562e-18	5.647843e-14	2.172247e-15
27	7941662	8147172	NM_003909	CPNE3	-0.722041	3.576514e-18	6.197026e-14	2.295195e-15
28	7941662	8023228	NM_017653	DYM	-0.720223	4.749567e-18	8.229574e-14	2.939134e-15
29	7941662	8097867	NM_015196	KIAA0922	-0.719824	5.053439e-18	8.756094e-14	3.019343e-15
30	7941662	8133809	NM_198467	RSBN1L	-0.719148	5.611604e-18	9.723226e-14	3.241075e-15
31	7941662	7936683	NM_001033925	TIAL1	-0.718633	6.076257e-18	1.052833e-13	3.396236e-15
32	7941662	8085815	NM_001068	TOP2B	-0.716932	7.894258e-18	1.367838e-13	4.274494e-15
33	7941662	8090577	NM_003925	MBD4	-0.716883	7.953791e-18	1.378153e-13	4.176222e-15
34	7941662	8041902	NM_002158	FOXN2	-0.715903	9.240523e-18	1.601105e-13	4.709134e-15
35	7941662	8090772	NM_007027	TOPBP1	-0.715879	9.274499e-18	1.606992e-13	4.591407e-15
36	7941662	8056909	NM_001880	ATF2	-0.715808	9.374484e-18	1.624317e-13	4.511991e-15
37	7941662	8097373	BC034253	C4orf29	-0.715542	9.762208e-18	1.691498e-13	4.571616e-15
38	7941662	7996393	NM_001755	CBFB	-0.713879	1.256730e-17	2.177537e-13	5.730359e-15
39	7941662	7955019	NM_152641	ARID2	-0.712734	1.493764e-17	2.588245e-13	6.636525e-15
40	7941662	8129522	NM_004830	MED23	-0.712722	1.496407e-17	2.592825e-13	6.482062e-15
41	7941662	7936614	NM_003750	EIF3A	-0.711950	1.680712e-17	2.912170e-13	7.102855e-15
42	7941662	7974771	NM_022495	C14orf135	-0.711411	1.822052e-17	3.157069e-13	7.516832e-15
43	7941662	8166956	NM_021140	KDM6A	-0.711410	1.822284e-17	3.157471e-13	7.342956e-15
44	7941662	7902269	NM_004768	SRSF11	-0.710514	2.083270e-17	3.609682e-13	8.203823e-15
45	7941662	8050565	NM_015317	PUM2	-0.710481	2.093658e-17	3.627682e-13	8.061515e-15
46	7941662	8141648	NM_015831	ACHE	0.710224	2.175509e-17	3.769504e-13	8.194574e-15
47	7941662	8151842	NM_015496	KIAA1429	-0.710121	2.209003e-17	3.827540e-13	8.143702e-15
48	7941662	8013947	NM_032854	CORO6	0.710113	2.211799e-17	3.832384e-13	7.984134e-15
49	7941662	7966368	NM_002710	PPP1CC	-0.709545	2.406587e-17	4.169894e-13	8.509988e-15
50	7941662	7988713	NM_017672	TRPM7	-0.709442	2.443817e-17	4.234402e-13	8.468805e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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