[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4028	8134712	NM_004722	AP4M1		adaptor-related protein complex 4, mu 1 subunit

Fetching correlation data, please wait...
Getting list of correlations for id 4028.
Getting list of p-values for id 4028.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.106 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8134712	7998784	NM_001089	ABCA3	0.532216	5.125939e-9	8.881714e-5	8.881714e-5
2	8134712	7986160	NM_001039675	UNC45A	0.528203	7.002770e-9	1.213370e-4	6.066850e-5
3	8134712	8012054	NM_001365	DLG4	0.507352	3.323702e-8	5.758979e-4	1.919660e-4
4	8134712	8083523	NM_003875	GMPS	-0.507264	3.345075e-8	5.796012e-4	1.449003e-4
5	8134712	7935903	NM_006993	NPM3	0.506214	3.607953e-8	6.251500e-4	1.250300e-4
6	8134712	7919208	NR_002328	GNRHR2	0.500176	5.547858e-8	9.612773e-4	1.602129e-4
7	8134712	8179648	NM_005275	GNL1	0.499687	5.742259e-8	9.949611e-4	1.421373e-4
8	8134712	7950235	NM_006645	STARD10	0.496529	7.165353e-8	1.241541e-3	1.551926e-4
9	8134712	8178346	NM_005275	GNL1	0.492569	9.428654e-8	1.633703e-3	1.815225e-4
10	8134712	8084219	NM_017644	KLHL24	-0.490099	1.116991e-7	1.935410e-3	1.935410e-4
11	8134712	7975793	NM_006399	BATF	0.489573	1.157839e-7	2.006188e-3	1.823808e-4
12	8134712	8052024	NM_025133	FBXO11	-0.487857	1.301254e-7	2.254683e-3	1.878903e-4
13	8134712	8064245	NM_198723	TCEA2	0.485790	1.496437e-7	2.592877e-3	1.994520e-4
14	8134712	8024089	NM_024100	WDR18	0.485350	1.541444e-7	2.670860e-3	1.907757e-4
15	8134712	8001748	NR_002980	SNORA50	-0.485298	1.546872e-7	2.680265e-3	1.786843e-4
16	8134712	8072989	NM_012407	PICK1	0.485150	1.562345e-7	2.707075e-3	1.691922e-4
17	8134712	7980152	NM_000428	LTBP2	0.483768	1.714234e-7	2.970253e-3	1.747208e-4
18	8134712	8033025	NM_020175	DUS3L	0.482390	1.879548e-7	3.256693e-3	1.809274e-4
19	8134712	8002082	NM_030819	GFOD2	0.482060	1.921317e-7	3.329067e-3	1.752140e-4
20	8134712	8010629	NM_199287	CCDC137	0.482038	1.924218e-7	3.334092e-3	1.667046e-4
21	8134712	8060187	NM_001085437	C2orf54	0.481527	1.990724e-7	3.449327e-3	1.642537e-4
22	8134712	8077528	NM_001080517	SETD5	-0.480164	2.179084e-7	3.775699e-3	1.716227e-4
23	8134712	8019316	NM_006907	PYCR1	0.479878	2.220807e-7	3.847993e-3	1.673040e-4
24	8134712	8135458	NM_024814	CBLL1	-0.479268	2.312163e-7	4.006285e-3	1.669286e-4
25	8134712	8042119	NM_022894	PAPOLG	-0.479001	2.353259e-7	4.077491e-3	1.630997e-4
26	8134712	7942798	NM_020798	USP35	0.477999	2.513737e-7	4.355552e-3	1.675212e-4
27	8134712	7970111	NM_003899	ARHGEF7	-0.477561	2.587119e-7	4.482701e-3	1.660260e-4
28	8134712	8156295	NM_024077	SECISBP2	-0.477511	2.595715e-7	4.497596e-3	1.606284e-4
29	8134712	8029536	NM_001645	APOC1	0.476551	2.764203e-7	4.789534e-3	1.651564e-4
30	8134712	8027352			-0.476448	2.782918e-7	4.821963e-3	1.607321e-4
31	8134712	8030158	NR_027882	BAX	0.475643	2.933290e-7	5.082511e-3	1.639520e-4
32	8134712	8016429	ENST00000384576		-0.475299	2.999806e-7	5.197764e-3	1.624301e-4
33	8134712	8000636	NM_130464	NPIPL3	-0.475148	3.029435e-7	5.249101e-3	1.590637e-4
34	8134712	7992271	NM_016111	TELO2	0.474670	3.125257e-7	5.415133e-3	1.592686e-4
35	8134712	8059028	NM_194302	CCDC108	0.472713	3.548330e-7	6.148192e-3	1.756626e-4
36	8134712	8177011	NM_004192	ASMTL	0.472577	3.579621e-7	6.202409e-3	1.722891e-4
37	8134712	8088776	NM_032682	FOXP1	-0.472021	3.710333e-7	6.428895e-3	1.737539e-4
38	8134712	7979412			-0.471770	3.771065e-7	6.534124e-3	1.719506e-4
39	8134712	8010719	NM_144999	LRRC45	0.470607	4.063968e-7	7.041637e-3	1.805548e-4
40	8134712	7959549	NM_001002252	ARL6IP4	0.470334	4.135858e-7	7.166202e-3	1.791550e-4
41	8134712	7897128	NM_080431	ACTRT2	0.469132	4.466761e-7	7.739558e-3	1.887697e-4
42	8134712	8002104	NM_025082	CENPT	0.468998	4.505309e-7	7.806349e-3	1.858654e-4
43	8134712	7909990	AK290103	LOC100287934	-0.468940	4.522076e-7	7.835402e-3	1.822186e-4
44	8134712	8010499	AK096344	FLJ35220	0.468369	4.689993e-7	8.126352e-3	1.846898e-4
45	8134712	7947969	NM_015308	FNBP4	-0.467889	4.835628e-7	8.378693e-3	1.861932e-4
46	8134712	7939434	NM_018259	TTC17	-0.467362	5.000527e-7	8.664412e-3	1.883568e-4
47	8134712	8002481	NM_032821	HYDIN	0.466692	5.217884e-7	9.041027e-3	1.923623e-4
48	8134712	8024497	NM_003249	THOP1	0.466592	5.250864e-7	9.098173e-3	1.895453e-4
49	8134712	8001576	NM_033212	CCDC102A	0.465258	5.713575e-7	9.899912e-3	2.020390e-4
50	8134712	8041781	NM_001430	EPAS1	0.464795	5.883033e-7	1.019353e-2	2.038706e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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