[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2935	8065427	NM_178311	GGTLC1		gamma-glutamyltransferase light chain 1

Fetching correlation data, please wait...
Getting list of correlations for id 2935.
Getting list of p-values for id 2935.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.161 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8065427	8084219	NM_017644	KLHL24	-0.734198	5.052224e-19	8.753988e-15	8.753988e-15
2	8065427	8090639	NM_014602	PIK3R4	-0.727141	1.593796e-18	2.761570e-14	1.380785e-14
3	8065427	8032699	NM_015174	ZFR2	0.726841	1.672272e-18	2.897546e-14	9.658488e-15
4	8065427	8070933	NM_006657	FTCD	0.715772	9.425932e-18	1.633231e-13	4.083078e-14
5	8065427	8162472	NM_021570	BARX1	0.714302	1.178719e-17	2.042367e-13	4.084734e-14
6	8065427	7936144	NM_000494	COL17A1	0.708689	2.732390e-17	4.734412e-13	7.890687e-14
7	8065427	8133704	NM_001110199	SRRM3	0.708167	2.951472e-17	5.114016e-13	7.305737e-14
8	8065427	8153322	NM_015193	ARC	0.708057	2.999754e-17	5.197673e-13	6.497091e-14
9	8065427	7987701	NM_016642	SPTBN5	0.703513	5.829972e-17	1.010159e-12	1.122399e-13
10	8065427	8068512	NM_018962	DSCR6	0.699273	1.071639e-16	1.856830e-12	1.856830e-13
11	8065427	8059028	NM_194302	CCDC108	0.695673	1.781911e-16	3.087517e-12	2.806834e-13
12	8065427	7950420	NM_001144869	LIPT2	0.695336	1.868153e-16	3.236949e-12	2.697458e-13
13	8065427	8156295	NM_024077	SECISBP2	-0.695066	1.940077e-16	3.361571e-12	2.585824e-13
14	8065427	7949033	NM_014067	MACROD1	0.694555	2.083894e-16	3.610763e-12	2.579117e-13
15	8065427	8089299	NM_001777	CD47	-0.693528	2.404121e-16	4.165621e-12	2.777081e-13
16	8065427	7942715	NM_006189	OMP	0.692086	2.936214e-16	5.087579e-12	3.179737e-13
17	8065427	8042119	NM_022894	PAPOLG	-0.690826	3.493395e-16	6.053006e-12	3.560592e-13
18	8065427	8109563	NM_001099287	NIPAL4	0.688553	4.768016e-16	8.261542e-12	4.589746e-13
19	8065427	7994985	NM_014712	SETD1A	0.688131	5.049767e-16	8.749731e-12	4.605122e-13
20	8065427	8176986	NM_013239	PPP2R3B	0.687512	5.492896e-16	9.517542e-12	4.758771e-13
21	8065427	7998190	NM_183337	RGS11	0.686073	6.673592e-16	1.156333e-11	5.506349e-13
22	8065427	8049919	NM_152783	D2HGDH	0.685012	7.698547e-16	1.333927e-11	6.063306e-13
23	8065427	7983663	NM_005154	USP8	-0.684976	7.735588e-16	1.340345e-11	5.827589e-13
24	8065427	8048205	NM_000597	IGFBP2	0.684316	8.451619e-16	1.464412e-11	6.101717e-13
25	8065427	7977418	NM_001134875	C14orf80	0.684188	8.598096e-16	1.489792e-11	5.959168e-13
26	8065427	8074716	NR_003267	GGT3P	0.683855	8.990337e-16	1.557756e-11	5.991368e-13
27	8065427	8086683	NM_182702	PRSS42	0.683590	9.313689e-16	1.613783e-11	5.976974e-13
28	8065427	8052024	NM_025133	FBXO11	-0.682290	1.107600e-15	1.919139e-11	6.854069e-13
29	8065427	7947991	NM_015231	NUP160	-0.682186	1.122878e-15	1.945611e-11	6.709005e-13
30	8065427	8004372	NM_003985	TNK1	0.681725	1.193747e-15	2.068406e-11	6.894686e-13
31	8065427	8116195	NM_173465	COL23A1	0.681704	1.197140e-15	2.074285e-11	6.691240e-13
32	8065427	8016320	NM_203400	RPRML	0.681175	1.284072e-15	2.224912e-11	6.952850e-13
33	8065427	8161533	NM_001085476	FOXD4L6	0.678996	1.710956e-15	2.964573e-11	8.983556e-13
34	8065427	8061572	NM_032609	COX4I2	0.678512	1.822863e-15	3.158475e-11	9.289634e-13
35	8065427	8079305	NM_003278	CLEC3B	0.678482	1.830225e-15	3.171232e-11	9.060662e-13
36	8065427	7920928	NM_024897	PAQR6	0.677953	1.961284e-15	3.398317e-11	9.439770e-13
37	8065427	8031511	NM_153219	ZNF524	0.677146	2.178926e-15	3.775424e-11	1.020385e-12
38	8065427	8018993	NM_001082575	HRNBP3	0.677097	2.192756e-15	3.799389e-11	9.998392e-13
39	8065427	8086810	NM_003074	SMARCC1	-0.676175	2.471897e-15	4.283055e-11	1.098219e-12
40	8065427	8134981	NM_003302	TRIP6	0.675508	2.695287e-15	4.670124e-11	1.167531e-12
41	8065427	8028407	NM_000540	RYR1	0.675499	2.698236e-15	4.675233e-11	1.140301e-12
42	8065427	7923372	NM_012396	PHLDA3	0.674303	3.148844e-15	5.456002e-11	1.299048e-12
43	8065427	7937560	NM_002457	MUC2	0.674209	3.187162e-15	5.522395e-11	1.284278e-12
44	8065427	7955869	NM_022658	HOXC8	0.673942	3.298402e-15	5.715141e-11	1.298896e-12
45	8065427	8000467	NM_001109763	GSG1L	0.673310	3.577531e-15	6.198787e-11	1.377508e-12
46	8065427	7940530	NM_001127392	C11orf9	0.672791	3.823524e-15	6.625020e-11	1.440222e-12
47	8065427	8053480	ENST00000362817		0.672318	4.061930e-15	7.038106e-11	1.497469e-12
48	8065427	7955305	NM_001652	AQP6	0.672256	4.094236e-15	7.094083e-11	1.477934e-12
49	8065427	8175732	NM_175742	MAGEA2	0.671604	4.449697e-15	7.709991e-11	1.573467e-12
50	8065427	7992302	NM_020825	CRAMP1L	0.671493	4.512777e-15	7.819288e-11	1.563858e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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