[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
5841	8053594	NM_172101	CD8B		CD8b molecule
12650	8044154	NM_172099	CD8B		CD8b molecule

Fetching correlation data, please wait...
Getting list of correlations for id 5841.
Getting list of p-values for id 5841.
1 of 2 done.
Getting list of correlations for id 12650.
Getting list of p-values for id 12650.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.167 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8044154	8053584	NR_027353	CD8A	0.726676	1.717049e-18	5.950262e-14	5.950262e-14
2	8053594	8044154	NM_172099	CD8B	0.627934	7.526992e-13	2.608404e-8	1.304202e-8
3	8044154	8053594	NM_172101	CD8B	0.627934	7.526992e-13	2.608404e-8	8.694679e-9
4	8053594	8053584	NR_027353	CD8A	0.594876	2.208027e-11	7.651697e-7	1.912924e-7
5	8053594	8014316	NM_002985	CCL5	0.551980	1.037556e-9	3.595548e-5	7.191096e-6
6	8044154	8014316	NM_002985	CCL5	0.520420	1.267820e-8	4.393503e-4	7.322504e-5
7	8053594	7958253	NM_001145199	C12orf75	0.510876	2.573269e-8	8.917406e-4	1.273915e-4
8	8053594	7952339	NR_001453	SNORD14C	0.508493	3.060427e-8	1.060560e-3	1.325700e-4
9	8053594	7917283	NM_153259	MCOLN2	0.508081	3.153214e-8	1.092715e-3	1.214127e-4
10	8053594	7906475	NM_001004310	FCRL6	0.491698	1.001055e-7	3.469055e-3	3.469055e-4
11	8053594	8139100	M30894	TARP	0.488382	1.255653e-7	4.351341e-3	3.955765e-4
12	8053594	8139121	ENST00000390346		0.480466	2.136011e-7	7.402132e-3	6.168443e-4
13	8044154	8152491	NM_000127	EXT1	-0.480192	2.175163e-7	7.537809e-3	5.798315e-4
14	8053594	7953835	NM_005810	KLRG1	0.479553	2.269012e-7	7.863036e-3	5.616454e-4
15	8053594	7904287	NM_001767	CD2	0.478722	2.396957e-7	8.306416e-3	5.537611e-4
16	8053594	8129482	NM_001017373	SAMD3	0.478419	2.445230e-7	8.473700e-3	5.296063e-4
17	8053594	7969693	NM_021033	RAP2A	0.476418	2.788438e-7	9.663054e-3	5.684149e-4
18	8053594	8073081	NM_145298	APOBEC3F	0.474120	3.239043e-7	1.122458e-2	6.235877e-4
19	8053594	8056545	NM_013233	STK39	0.473730	3.322127e-7	1.151250e-2	6.059209e-4
20	8053594	8085946	NM_005442	EOMES	0.470851	4.000745e-7	1.386418e-2	6.932092e-4
21	8053594	7992828	NM_001012631	IL32	0.470787	4.017268e-7	1.392144e-2	6.629258e-4
22	8044154	8085946	NM_005442	EOMES	0.467303	5.019367e-7	1.739411e-2	7.906415e-4
23	8044154	7983290	NM_001018108	SERF2	0.459781	8.050026e-7	2.789656e-2	1.212894e-3
24	8053594	7906613	NM_021181	SLAMF7	0.459415	8.235210e-7	2.853830e-2	1.189096e-3
25	8044154	8131135	NM_018641	CHST12	0.457446	9.300668e-7	3.223053e-2	1.289221e-3
26	8053594	8106393	NM_001992	F2R	0.456627	9.781139e-7	3.389556e-2	1.303675e-3
27	8044154	8117422	NM_003540	HIST1H4F	0.451391	1.345675e-6	4.663301e-2	1.727148e-3
28	8053594	8163525	NR_027261	POLE3	0.446782	1.774291e-6	6.148628e-2	2.195939e-3
29	8053594	7961151	NM_007360	KLRK1	0.446262	1.830049e-6	6.341851e-2	2.186845e-3
30	8053594	8176568	ENST00000410156		0.443831	2.113520e-6	7.324191e-2	2.441397e-3
31	8053594	8147988			0.442543	2.279985e-6	7.901060e-2	2.548729e-3
32	8053594	8139113	ENST00000447997		0.441442	2.431990e-6	8.427819e-2	2.633693e-3
33	8044154	7906475	NM_001004310	FCRL6	0.441265	2.457437e-6	8.516002e-2	2.580607e-3
34	8053594	8105331	NM_002104	GZMK	0.441240	2.460991e-6	8.528319e-2	2.508329e-3
35	8044154	7916568	AF263547	DAB1	0.439892	2.662586e-6	9.226926e-2	2.636265e-3
36	8053594	8150962	NM_014729	TOX	0.439830	2.672082e-6	9.259832e-2	2.572175e-3
37	8044154	8107855	NR_023344	RNU6ATAC	0.437410	3.074997e-6	1.065610e-1	2.880026e-3
38	8053594	7953949	NM_002262	KLRD1	0.435232	3.486155e-6	1.208092e-1	3.179190e-3
39	8053594	7968254	NM_152705	POLR1D	0.434654	3.603681e-6	1.248819e-1	3.202101e-3
40	8053594	7978360	NM_033423	GZMH	0.431414	4.334614e-6	1.502117e-1	3.755293e-3
41	8044154	7922299	ENST00000364256		0.430665	4.522557e-6	1.567247e-1	3.822553e-3
42	8044154	8155596	BC110369	LOC203274	0.427620	5.368420e-6	1.860372e-1	4.429457e-3
43	8044154	7925062	NM_020808	SIPA1L2	-0.427327	5.457098e-6	1.891103e-1	4.397913e-3
44	8053594	8000998	NM_024006	VKORC1	0.426228	5.802851e-6	2.010920e-1	4.570272e-3
45	8053594	7917649	NM_003243	TGFBR3	0.426203	5.810893e-6	2.013707e-1	4.474904e-3
46	8044154	8105331	NM_002104	GZMK	0.426189	5.815431e-6	2.015279e-1	4.381042e-3
47	8044154	7917283	NM_153259	MCOLN2	0.426136	5.832677e-6	2.021256e-1	4.300545e-3
48	8053594	7975760	NM_014239	EIF2B2	0.426116	5.839322e-6	2.023559e-1	4.215747e-3
49	8044154	8117598	NM_021968	HIST1H4J	0.425867	5.920752e-6	2.051777e-1	4.187301e-3
50	8053594	8006608	NM_001001435	CCL4L1	0.425559	6.023449e-6	2.087366e-1	4.174732e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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