[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
8973	8006608	NM_001001435	CCL4L1		chemokine (C-C motif) ligand 4-like 1
11520	8006621	NM_001001435	CCL4L1		chemokine (C-C motif) ligand 4-like 1
11521	8019651	NM_001001435	CCL4L1		chemokine (C-C motif) ligand 4-like 1

Fetching correlation data, please wait...
Getting list of correlations for id 8973.
Getting list of p-values for id 8973.
1 of 3 done.
Getting list of correlations for id 11520.
Getting list of p-values for id 11520.
2 of 3 done.
Getting list of correlations for id 11521.
Getting list of p-values for id 11521.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.223 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8006621	8019651	NM_001001435	CCL4L1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8019651	8006621	NM_001001435	CCL4L1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8006608	8019651	NM_001001435	CCL4L1	0.975901	6.447611e-70	3.351533e-65	1.117178e-65
4	8019651	8006608	NM_001001435	CCL4L1	0.975901	6.447611e-70	3.351533e-65	8.378832e-66
5	8006608	8006621	NM_001001435	CCL4L1	0.975901	6.447611e-70	3.351533e-65	6.703065e-66
6	8006621	8006608	NM_001001435	CCL4L1	0.975901	6.447611e-70	3.351533e-65	5.585888e-66
7	8019651	8099471	NM_031950	FGFBP2	0.773922	3.693777e-22	1.920062e-17	2.742946e-18
8	8006621	8099471	NM_031950	FGFBP2	0.773922	3.693777e-22	1.920062e-17	2.400078e-18
9	8006621	8038809	NM_005601	NKG7	0.772672	4.739209e-22	2.463488e-17	2.737209e-18
10	8019651	8038809	NM_005601	NKG7	0.772672	4.739209e-22	2.463488e-17	2.463488e-18
11	8006608	8099471	NM_031950	FGFBP2	0.769850	8.271713e-22	4.299719e-17	3.908836e-18
12	8006608	7906475	NM_001004310	FCRL6	0.762279	3.545721e-21	1.843101e-16	1.535918e-17
13	8019651	7934161	NM_005041	PRF1	0.759789	5.656938e-21	2.940533e-16	2.261948e-17
14	8006621	7934161	NM_005041	PRF1	0.759789	5.656938e-21	2.940533e-16	2.100381e-17
15	8006621	7996081	NM_201524	GPR56	0.756821	9.797970e-21	5.093083e-16	3.395388e-17
16	8019651	7996081	NM_201524	GPR56	0.756821	9.797970e-21	5.093083e-16	3.183177e-17
17	8019651	7906475	NM_001004310	FCRL6	0.755661	1.211803e-20	6.299075e-16	3.705338e-17
18	8006621	7906475	NM_001004310	FCRL6	0.755661	1.211803e-20	6.299075e-16	3.499486e-17
19	8006608	8038809	NM_005601	NKG7	0.751353	2.641073e-20	1.372856e-15	7.225558e-17
20	8006608	7939383	NM_024841	PRR5L	0.746932	5.780045e-20	3.004525e-15	1.502263e-16
21	8006608	7996081	NM_201524	GPR56	0.745777	7.072574e-20	3.676394e-15	1.750664e-16
22	8019651	7906613	NM_021181	SLAMF7	0.744425	8.946721e-20	4.650595e-15	2.113907e-16
23	8006621	7906613	NM_021181	SLAMF7	0.744425	8.946721e-20	4.650595e-15	2.021998e-16
24	8019651	7939383	NM_024841	PRR5L	0.744327	9.100147e-20	4.730347e-15	1.970978e-16
25	8006621	7939383	NM_024841	PRR5L	0.744327	9.100147e-20	4.730347e-15	1.892139e-16
26	8006608	7934161	NM_005041	PRF1	0.739236	2.175238e-19	1.130710e-14	4.348886e-16
27	8006608	7906613	NM_021181	SLAMF7	0.736806	3.274428e-19	1.702081e-14	6.304002e-16
28	8019651	7953949	NM_002262	KLRD1	0.728390	1.304010e-18	6.778374e-14	2.420848e-15
29	8006621	7953949	NM_002262	KLRD1	0.728390	1.304010e-18	6.778374e-14	2.337370e-15
30	8006608	7953949	NM_002262	KLRD1	0.718728	5.988253e-18	3.112754e-13	1.037585e-14
31	8006608	7917649	NM_003243	TGFBR3	0.717715	6.999772e-18	3.638552e-13	1.173726e-14
32	8019651	8040103	NM_002166	ID2	0.714390	1.163177e-17	6.046313e-13	1.889473e-14
33	8006621	8040103	NM_002166	ID2	0.714390	1.163177e-17	6.046313e-13	1.832216e-14
34	8006621	7917649	NM_003243	TGFBR3	0.712016	1.664032e-17	8.649805e-13	2.544060e-14
35	8019651	7917649	NM_003243	TGFBR3	0.712016	1.664032e-17	8.649805e-13	2.471373e-14
36	8006621	8014316	NM_002985	CCL5	0.710995	1.938964e-17	1.007893e-12	2.799702e-14
37	8019651	8014316	NM_002985	CCL5	0.710995	1.938964e-17	1.007893e-12	2.724034e-14
38	8006608	8014316	NM_002985	CCL5	0.707792	3.119644e-17	1.621622e-12	4.267426e-14
39	8019651	8105340	NM_006144	GZMA	0.693046	2.570603e-16	1.336225e-11	3.426218e-13
40	8006621	8105340	NM_006144	GZMA	0.693046	2.570603e-16	1.336225e-11	3.340563e-13
41	8006608	8105340	NM_006144	GZMA	0.691676	3.107157e-16	1.615131e-11	3.939344e-13
42	8006608	8006602	NM_002984	CCL4	0.690391	3.708580e-16	1.927757e-11	4.589897e-13
43	8006608	8040103	NM_002166	ID2	0.684839	7.878943e-16	4.095553e-11	9.524542e-13
44	8006621	7978366	NM_004131	GZMB	0.677409	2.105475e-15	1.094447e-10	2.487380e-12
45	8019651	7978366	NM_004131	GZMB	0.677409	2.105475e-15	1.094447e-10	2.432105e-12
46	8006608	7942957	NM_007173	PRSS23	0.674197	3.191968e-15	1.659217e-10	3.606993e-12
47	8006608	7974363	NM_000953	PTGDR	0.673101	3.674487e-15	1.910035e-10	4.063905e-12
48	8006621	7921677	NM_016382	CD244	0.664597	1.073858e-14	5.582022e-10	1.162921e-11
49	8019651	7921677	NM_016382	CD244	0.664597	1.073858e-14	5.582022e-10	1.139188e-11
50	8006621	8006602	NM_002984	CCL4	0.664566	1.078013e-14	5.603620e-10	1.120724e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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