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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
6495 8006602 NM_002984 CCL4 link to infopage chemokine (C-C motif) ligand 4

Fetching correlation data, please wait...
Getting list of correlations for id 6495.
Getting list of p-values for id 6495.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.112 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8006602 8006608 NM_001001435 CCL4L1 link to infopage 0.690391 3.708580e-16 6.425856e-12 6.425856e-12
2 8006602 7906475 NM_001004310 FCRL6 link to infopage 0.681734 1.192322e-15 2.065936e-11 1.032968e-11
3 8006602 7953949 NM_002262 KLRD1 link to infopage 0.675440 2.719025e-15 4.711254e-11 1.570418e-11
4 8006602 8006621 NM_001001435 CCL4L1 link to infopage 0.664566 1.078013e-14 1.867873e-10 4.669683e-11
5 8006602 8019651 NM_001001435 CCL4L1 link to infopage 0.664566 1.078013e-14 1.867873e-10 3.735746e-11
6 8006602 8099471 NM_031950 FGFBP2 link to infopage 0.659780 1.941239e-14 3.363585e-10 5.605975e-11
7 8006602 7978360 NM_033423 GZMH link to infopage 0.656268 2.969209e-14 5.144749e-10 7.349641e-11
8 8006602 7917649 NM_003243 TGFBR3 link to infopage 0.636777 2.844587e-13 4.928817e-9 6.161021e-10
9 8006602 7961151 NM_007360 KLRK1 link to infopage 0.634455 3.683900e-13 6.383093e-9 7.092325e-10
10 8006602 8105340 NM_006144 GZMA link to infopage 0.622132 1.401871e-12 2.429022e-8 2.429022e-9
11 8006602 8151101 NM_001080416 MYBL1 link to infopage 0.619302 1.889791e-12 3.274440e-8 2.976764e-9
12 8006602 7908161 NM_030806 C1orf21 link to infopage 0.617732 2.227525e-12 3.859633e-8 3.216361e-9
13 8006602 8038809 NM_005601 NKG7 link to infopage 0.606410 7.099348e-12 1.230104e-7 9.462339e-9
14 8006602 8139100 M30894 TARP link to infopage 0.606353 7.139890e-12 1.237129e-7 8.836634e-9
15 8006602 7951752 NM_020886 USP28 link to infopage 0.604729 8.399943e-12 1.455458e-7 9.703055e-9
16 8006602 8014316 NM_002985 CCL5 link to infopage 0.604161 8.889273e-12 1.540244e-7 9.626527e-9
17 8006602 7961166 NM_013431 KLRC4 link to infopage 0.603712 9.295559e-12 1.610642e-7 9.474362e-9
18 8006602 7906613 NM_021181 SLAMF7 link to infopage 0.602573 1.040773e-11 1.803348e-7 1.001860e-8
19 8006602 8139113 ENST00000447997 link to infopage 0.600518 1.274728e-11 2.208721e-7 1.162485e-8
20 8006602 8152119 NM_001040624 NCALD link to infopage 0.597867 1.652356e-11 2.863037e-7 1.431518e-8
21 8006602 7939383 NM_024841 PRR5L link to infopage 0.597351 1.737401e-11 3.010394e-7 1.433521e-8
22 8006602 7950810 NM_206927 SYTL2 link to infopage 0.597201 1.763016e-11 3.054777e-7 1.388535e-8
23 8006602 7996081 NM_201524 GPR56 link to infopage 0.596226 1.937932e-11 3.357855e-7 1.459937e-8
24 8006602 7942957 NM_007173 PRSS23 link to infopage 0.592743 2.710310e-11 4.696154e-7 1.956731e-8
25 8006602 7906386 NM_152501 PYHIN1 link to infopage 0.589688 3.625301e-11 6.281559e-7 2.512624e-8
26 8006602 8129482 NM_001017373 SAMD3 link to infopage 0.583296 6.599054e-11 1.143418e-6 4.397762e-8
27 8006602 8140782 NM_000927 ABCB1 link to infopage 0.580905 8.228256e-11 1.425710e-6 5.280407e-8
28 8006602 7934161 NM_005041 PRF1 link to infopage 0.577438 1.129695e-10 1.957422e-6 6.990793e-8
29 8006602 7978366 NM_004131 GZMB link to infopage 0.571723 1.889351e-10 3.273678e-6 1.128855e-7
30 8006602 7974363 NM_000953 PTGDR link to infopage 0.571636 1.904171e-10 3.299357e-6 1.099786e-7
31 8006602 8156026 NM_001098802 CEP78 link to infopage 0.571051 2.005837e-10 3.475514e-6 1.121134e-7
32 8006602 7922040 NM_198053 CD247 link to infopage 0.570554 2.096570e-10 3.632727e-6 1.135227e-7
33 8006602 8091120 NM_001039547 GK5 link to infopage 0.553209 9.362027e-10 1.622158e-5 4.915632e-7
34 8006602 8073088 NM_021822 APOBEC3G link to infopage 0.552327 1.007901e-9 1.746391e-5 5.136444e-7
35 8006602 8061416 NM_003650 CST7 link to infopage 0.549444 1.281104e-9 2.219770e-5 6.342199e-7
36 8006602 7907430 NM_000639 FASLG link to infopage 0.549016 1.327206e-9 2.299650e-5 6.387918e-7
37 8006602 8057771 NM_003151 STAT4 link to infopage 0.546772 1.596703e-9 2.766607e-5 7.477315e-7
38 8006602 8059854 NM_005737 ARL4C link to infopage 0.545915 1.712837e-9 2.967833e-5 7.810086e-7
39 8006602 7965812 NM_024312 GNPTAB link to infopage 0.540934 2.566105e-9 4.446291e-5 1.140074e-6
40 8006602 7953892 NM_016523 KLRF1 link to infopage 0.538810 3.042836e-9 5.272323e-5 1.318081e-6
41 8006602 8106393 NM_001992 F2R link to infopage 0.534113 4.416921e-9 7.653200e-5 1.866634e-6
42 8006602 7953835 NM_005810 KLRG1 link to infopage 0.533171 4.756327e-9 8.241288e-5 1.962211e-6
43 8006602 8094533 AK304357 DTHD1 link to infopage 0.529804 6.186411e-9 1.071919e-4 2.492836e-6
44 8006602 7932512 NM_022365 DNAJC1 link to infopage 0.529181 6.492306e-9 1.124922e-4 2.556641e-6
45 8006602 8034043 NM_030760 S1PR5 link to infopage 0.526897 7.744477e-9 1.341885e-4 2.981968e-6
46 8006602 7906863 NM_003115 UAP1 link to infopage 0.526847 7.774347e-9 1.347061e-4 2.928394e-6
47 8006602 8086344 NM_001337 CX3CR1 link to infopage 0.522171 1.110800e-8 1.924684e-4 4.095071e-6
48 8006602 7941444 NM_001335 CTSW link to infopage 0.519272 1.382098e-8 2.394760e-4 4.989084e-6
49 8006602 8123062 NM_020823 TMEM181 link to infopage 0.517098 1.626137e-8 2.817607e-4 5.750218e-6
50 8006602 8014248 NM_144682 SLFN13 link to infopage 0.513807 2.075300e-8 3.595873e-4 7.191745e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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