[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 11521.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
11521	8019651	NM_001001435	CCL4L1		chemokine (C-C motif) ligand 4-like 1

Fetching correlation data, please wait...
Getting list of correlations for id 11521.
Getting list of p-values for id 11521.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.092 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8019651	8006621	NM_001001435	CCL4L1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8019651	8006608	NM_001001435	CCL4L1	0.975901	6.447611e-70	1.117178e-65	5.585888e-66
3	8019651	8099471	NM_031950	FGFBP2	0.773922	3.693777e-22	6.400208e-18	2.133403e-18
4	8019651	8038809	NM_005601	NKG7	0.772672	4.739209e-22	8.211627e-18	2.052907e-18
5	8019651	7934161	NM_005041	PRF1	0.759789	5.656938e-21	9.801777e-17	1.960355e-17
6	8019651	7996081	NM_201524	GPR56	0.756821	9.797970e-21	1.697694e-16	2.829490e-17
7	8019651	7906475	NM_001004310	FCRL6	0.755661	1.211803e-20	2.099692e-16	2.999560e-17
8	8019651	7906613	NM_021181	SLAMF7	0.744425	8.946721e-20	1.550198e-15	1.937748e-16
9	8019651	7939383	NM_024841	PRR5L	0.744327	9.100147e-20	1.576782e-15	1.751980e-16
10	8019651	7953949	NM_002262	KLRD1	0.728390	1.304010e-18	2.259458e-14	2.259458e-15
11	8019651	8040103	NM_002166	ID2	0.714390	1.163177e-17	2.015438e-13	1.832216e-14
12	8019651	7917649	NM_003243	TGFBR3	0.712016	1.664032e-17	2.883268e-13	2.402724e-14
13	8019651	8014316	NM_002985	CCL5	0.710995	1.938964e-17	3.359642e-13	2.584340e-14
14	8019651	8105340	NM_006144	GZMA	0.693046	2.570603e-16	4.454084e-12	3.181489e-13
15	8019651	7978366	NM_004131	GZMB	0.677409	2.105475e-15	3.648157e-11	2.432105e-12
16	8019651	7921677	NM_016382	CD244	0.664597	1.073858e-14	1.860674e-10	1.162921e-11
17	8019651	8006602	NM_002984	CCL4	0.664566	1.078013e-14	1.867873e-10	1.098749e-11
18	8019651	7974363	NM_000953	PTGDR	0.663379	1.248596e-14	2.163443e-10	1.201913e-11
19	8019651	7942957	NM_007173	PRSS23	0.658549	2.254487e-14	3.906349e-10	2.055973e-11
20	8019651	7941444	NM_001335	CTSW	0.655856	3.119853e-14	5.405769e-10	2.702885e-11
21	8019651	8106393	NM_001992	F2R	0.655807	3.138069e-14	5.437332e-10	2.589206e-11
22	8019651	7958253	NM_001145199	C12orf75	0.654464	3.685184e-14	6.385319e-10	2.902418e-11
23	8019651	8086344	NM_001337	CX3CR1	0.653032	4.370326e-14	7.572464e-10	3.292376e-11
24	8019651	7978360	NM_033423	GZMH	0.652086	4.889274e-14	8.471645e-10	3.529852e-11
25	8019651	8061416	NM_003650	CST7	0.648203	7.714522e-14	1.336695e-9	5.346781e-11
26	8019651	8156026	NM_001098802	CEP78	0.647916	7.977517e-14	1.382264e-9	5.316401e-11
27	8019651	7908161	NM_030806	C1orf21	0.646116	9.831882e-14	1.703570e-9	6.309519e-11
28	8019651	7922040	NM_198053	CD247	0.645957	1.001336e-13	1.735015e-9	6.196480e-11
29	8019651	7906061	NM_152280	SYT11	0.638600	2.318256e-13	4.016843e-9	1.385118e-10
30	8019651	8150962	NM_014729	TOX	0.630097	5.950126e-13	1.030978e-8	3.436594e-10
31	8019651	8139100	M30894	TARP	0.629171	6.581788e-13	1.140426e-8	3.678795e-10
32	8019651	7906386	NM_152501	PYHIN1	0.629050	6.669029e-13	1.155543e-8	3.611071e-10
33	8019651	7951752	NM_020886	USP28	0.625250	1.005213e-12	1.741732e-8	5.277976e-10
34	8019651	8176163	NM_001081573	GAB3	0.623888	1.162978e-12	2.015091e-8	5.926740e-10
35	8019651	8043236	NM_012483	GNLY	0.622232	1.387066e-12	2.403369e-8	6.866769e-10
36	8019651	8008029	NM_013351	TBX21	0.621514	1.496797e-12	2.593501e-8	7.204169e-10
37	8019651	8152119	NM_001040624	NCALD	0.620541	1.658915e-12	2.874402e-8	7.768653e-10
38	8019651	8075106	NM_003595	TPST2	0.620021	1.752293e-12	3.036199e-8	7.989997e-10
39	8019651	7961151	NM_007360	KLRK1	0.616950	2.416800e-12	4.187589e-8	1.073741e-9
40	8019651	8129482	NM_001017373	SAMD3	0.614897	2.990585e-12	5.181787e-8	1.295447e-9
41	8019651	8139113	ENST00000447997		0.613956	3.295800e-12	5.710633e-8	1.392837e-9
42	8019651	8131140	AK024457	LOC100288594	0.610803	4.552846e-12	7.888715e-8	1.878266e-9
43	8019651	8123062	NM_020823	TMEM181	0.603311	9.673055e-12	1.676050e-7	3.897791e-9
44	8019651	8091120	NM_001039547	GK5	0.602103	1.090304e-11	1.889169e-7	4.293566e-9
45	8019651	8034043	NM_030760	S1PR5	0.600555	1.270145e-11	2.200780e-7	4.890623e-9
46	8019651	8151101	NM_001080416	MYBL1	0.600439	1.284665e-11	2.225939e-7	4.838999e-9
47	8019651	7961166	NM_013431	KLRC4	0.598477	1.556940e-11	2.697710e-7	5.739808e-9
48	8019651	8022531	NM_000271	NPC1	0.594023	2.397059e-11	4.153384e-7	8.652884e-9
49	8019651	8130211	NM_182961	SYNE1	0.593047	2.632343e-11	4.561061e-7	9.308288e-9
50	8019651	7953835	NM_005810	KLRG1	0.590288	3.424852e-11	5.934242e-7	1.186848e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation