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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
5237 8178988 NM_005453 ZBTB22 link to infopage zinc finger and BTB domain containing 22
7430 8125731 NM_005453 ZBTB22 link to infopage zinc finger and BTB domain containing 22

Fetching correlation data, please wait...
Getting list of correlations for id 5237.
Getting list of p-values for id 5237.
1 of 2 done.
Getting list of correlations for id 7430.
Getting list of p-values for id 7430.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.209 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8178988 8125731 NM_005453 ZBTB22 link to infopage 0.944311 1.574955e-51 5.457849e-47 5.457849e-47
2 8125731 8178988 NM_005453 ZBTB22 link to infopage 0.944311 1.574955e-51 5.457849e-47 2.728925e-47
3 8125731 7992302 NM_020825 CRAMP1L link to infopage 0.741569 1.462828e-19 5.069285e-15 1.689762e-15
4 8125731 7952893 BC024764 IQSEC3 link to infopage 0.738320 2.539245e-19 8.799499e-15 2.199875e-15
5 8125731 8089299 NM_001777 CD47 link to infopage -0.727991 1.390609e-18 4.819018e-14 9.638036e-15
6 8125731 8109403 NR_024152 MFAP3 link to infopage -0.723613 2.792865e-18 9.678393e-14 1.613065e-14
7 8125731 8067820 BC024764 IQSEC3 link to infopage 0.718063 6.635306e-18 2.299399e-13 3.284856e-14
8 8125731 8045381 NM_058241 CCNT2 link to infopage -0.712843 1.469454e-17 5.092247e-13 6.365309e-14
9 8125731 8153497 NM_182706 SCRIB link to infopage 0.712003 1.667266e-17 5.777743e-13 6.419715e-14
10 8125731 7949754 NM_013246 CLCF1 link to infopage 0.708201 2.936809e-17 1.017722e-12 1.017722e-13
11 8125731 8132978 ENST00000447142 link to infopage 0.704955 4.727866e-17 1.638395e-12 1.489450e-13
12 8125731 8158009 NM_014580 SLC2A8 link to infopage 0.702602 6.650398e-17 2.304629e-12 1.920524e-13
13 8125731 7939424 NR_024625 API5 link to infopage -0.700811 8.602801e-17 2.981214e-12 2.293242e-13
14 8125731 8120022 NM_001253 CDC5L link to infopage -0.698919 1.126988e-16 3.905463e-12 2.789616e-13
15 8125731 7952103 NM_004397 DDX6 link to infopage -0.698505 1.195129e-16 4.141599e-12 2.761066e-13
16 8125731 8131539 NM_018374 TMEM106B link to infopage -0.697753 1.329482e-16 4.607187e-12 2.879492e-13
17 8125731 8051882 NM_133259 LRPPRC link to infopage -0.697709 1.337819e-16 4.636079e-12 2.727105e-13
18 8125731 7947991 NM_015231 NUP160 link to infopage -0.697492 1.379416e-16 4.780226e-12 2.655681e-13
19 8125731 8031815 NM_173632 ZNF776 link to infopage -0.697353 1.406873e-16 4.875379e-12 2.565989e-13
20 8125731 8105353 NM_015360 SKIV2L2 link to infopage -0.697307 1.415996e-16 4.906992e-12 2.453496e-13
21 8125731 7957715 NM_001135175 NEDD1 link to infopage -0.697230 1.431407e-16 4.960399e-12 2.362095e-13
22 8125731 8032465 NM_144616 JSRP1 link to infopage 0.697155 1.446737e-16 5.013523e-12 2.278874e-13
23 8125731 8105545 NM_016338 IPO11 link to infopage -0.696949 1.489425e-16 5.161452e-12 2.244110e-13
24 8125731 8050176 NM_004763 ITGB1BP1 link to infopage -0.694459 2.111759e-16 7.318091e-12 3.049204e-13
25 8125731 8109179 NM_133263 PPARGC1B link to infopage 0.694330 2.150360e-16 7.451856e-12 2.980743e-13
26 8125731 7996468 NM_024712 ELMO3 link to infopage 0.694190 2.192448e-16 7.597709e-12 2.922196e-13
27 8125731 8159670 NM_006647 NOXA1 link to infopage 0.692968 2.598662e-16 9.005402e-12 3.335334e-13
28 8125731 8064111 NM_032957 RTEL1 link to infopage 0.692548 2.754408e-16 9.545125e-12 3.408973e-13
29 8125731 8113469 NM_014819 PJA2 link to infopage -0.691647 3.119730e-16 1.081111e-11 3.727970e-13
30 8125731 7930454 NM_145341 PDCD4 link to infopage -0.691609 3.135975e-16 1.086741e-11 3.622470e-13
31 8125731 8048460 NM_003936 CDK5R2 link to infopage 0.691319 3.264258e-16 1.131196e-11 3.649019e-13
32 8125731 8156167 NM_024635 NAA35 link to infopage -0.690307 3.751100e-16 1.299906e-11 4.062207e-13
33 8125731 7929201 NM_003972 BTAF1 link to infopage -0.689533 4.171078e-16 1.445446e-11 4.380138e-13
34 8125731 8078360 NM_178862 STT3B link to infopage -0.689118 4.414392e-16 1.529763e-11 4.499304e-13
35 8125731 8024347 NM_079834 SCAMP4 link to infopage 0.688770 4.629340e-16 1.604251e-11 4.583575e-13
36 8125731 7944530 NM_178507 OAF link to infopage 0.687838 5.255121e-16 1.821110e-11 5.058638e-13
37 8125731 8137715 NM_182924 MICALL2 link to infopage 0.686984 5.900319e-16 2.044697e-11 5.526207e-13
38 8125731 8064042 NM_175609 ARFGAP1 link to infopage 0.686964 5.916454e-16 2.050288e-11 5.395494e-13
39 8125731 8097480 NM_057175 NAA15 link to infopage -0.685977 6.761078e-16 2.342984e-11 6.007651e-13
40 8125731 8031550 NM_001130071 EPN1 link to infopage 0.685872 6.857213e-16 2.376299e-11 5.940747e-13
41 8125731 7994985 NM_014712 SETD1A link to infopage 0.685510 7.199461e-16 2.494901e-11 6.085125e-13
42 8125731 8085815 NM_001068 TOP2B link to infopage -0.684900 7.814976e-16 2.708202e-11 6.448099e-13
43 8125731 8133704 NM_001110199 SRRM3 link to infopage 0.683440 9.501785e-16 3.292749e-11 7.657555e-13
44 8125731 7945462 NM_004031 IRF7 link to infopage 0.682567 1.067431e-15 3.699074e-11 8.406986e-13
45 8125731 7966343 ENST00000365465 link to infopage -0.681293 1.264086e-15 4.380563e-11 9.734584e-13
46 8125731 8044263 NM_006267 RANBP2 link to infopage -0.680881 1.334987e-15 4.626265e-11 1.005710e-12
47 8125731 8083523 NM_003875 GMPS link to infopage -0.680802 1.348987e-15 4.674779e-11 9.946339e-13
48 8125731 7903281 NM_012243 SLC35A3 link to infopage -0.679743 1.551068e-15 5.375070e-11 1.119806e-12
49 8125731 8024605 NM_021938 CELF5 link to infopage 0.679409 1.620663e-15 5.616246e-11 1.146173e-12
50 8125731 8024995 NM_004558 NRTN link to infopage 0.678895 1.733795e-15 6.008292e-11 1.201658e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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