[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7358	7994692	NM_016151	TAOK2		TAO kinase 2

Fetching correlation data, please wait...
Getting list of correlations for id 7358.
Getting list of p-values for id 7358.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.099 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7994692	7995033	NM_014699	ZNF646	0.583336	6.574115e-11	1.139097e-6	1.139097e-6
2	7994692	8003448	NM_013275	ANKRD11	0.559015	5.727564e-10	9.924150e-6	4.962075e-6
3	7994692	8063097	NM_022104	PCIF1	0.557885	6.307369e-10	1.092878e-5	3.642926e-6
4	7994692	8076241	NM_020831	MKL1	0.555770	7.546591e-10	1.307598e-5	3.268995e-6
5	7994692	7992998	NM_001142290	MGRN1	0.554174	8.633613e-10	1.495946e-5	2.991892e-6
6	7994692	8165217	NM_017617	NOTCH1	0.545947	1.708384e-9	2.960116e-5	4.933527e-6
7	7994692	8175900	NM_001666	ARHGAP4	0.544667	1.896634e-9	3.286297e-5	4.694710e-6
8	7994692	8132980	NM_001080495	TNRC18	0.540749	2.604663e-9	4.513100e-5	5.641375e-6
9	7994692	8019296	NM_016538	SIRT7	0.538634	3.086057e-9	5.347210e-5	5.941345e-6
10	7994692	7941985	NM_006019	TCIRG1	0.536228	3.737143e-9	6.475348e-5	6.475348e-6
11	7994692	8026610	NM_015260	SIN3B	0.530716	5.762796e-9	9.985196e-5	9.077451e-6
12	7994692	7906652	NM_005600	NIT1	0.526934	7.722309e-9	1.338044e-4	1.115037e-5
13	7994692	8110327	NM_006480	RGS14	0.526671	7.880005e-9	1.365368e-4	1.050283e-5
14	7994692	8026830	NM_015122	FCHO1	0.526329	8.089760e-9	1.401713e-4	1.001223e-5
15	7994692	7949277	NM_015104	ATG2A	0.525105	8.884994e-9	1.539503e-4	1.026335e-5
16	7994692	8018449	NM_199242	UNC13D	0.522178	1.110192e-8	1.923629e-4	1.202268e-5
17	7994692	8028624	NM_018028	SAMD4B	0.522070	1.119351e-8	1.939499e-4	1.140882e-5
18	7994692	7975095	NM_015549	PLEKHG3	0.521668	1.153886e-8	1.999338e-4	1.110743e-5
19	7994692	8087308	NM_006677	USP19	0.519804	1.327978e-8	2.300987e-4	1.211046e-5
20	7994692	7941311	NM_153253	SIPA1	0.519644	1.344021e-8	2.328786e-4	1.164393e-5
21	7994692	8024909	NM_015015	KDM4B	0.515412	1.843149e-8	3.193624e-4	1.520773e-5
22	7994692	8137953	NM_001080495	TNRC18	0.510890	2.570740e-8	4.454321e-4	2.024691e-5
23	7994692	8170882	NM_001183	ATP6AP1	0.508793	2.994641e-8	5.188815e-4	2.256007e-5
24	7994692	7937150	NM_001109	ADAM8	0.508159	3.135348e-8	5.432618e-4	2.263591e-5
25	7994692	8156476	NM_005392	PHF2	0.507796	3.218857e-8	5.577313e-4	2.230925e-5
26	7994692	8117861	NR_027822	HLA-L	0.507051	3.396760e-8	5.885565e-4	2.263679e-5
27	7994692	8179080	NR_027822	HLA-L	0.507051	3.396760e-8	5.885565e-4	2.179839e-5
28	7994692	7982845	NM_020857	VPS18	0.506325	3.579353e-8	6.201945e-4	2.214980e-5
29	7994692	7911730	NM_018216	PANK4	0.503139	4.496604e-8	7.791266e-4	2.686643e-5
30	7994692	8009995	NM_001080419	UNK	0.501281	5.130937e-8	8.890375e-4	2.963458e-5
31	7994692	8098789	NM_005255	GAK	0.499893	5.659760e-8	9.806666e-4	3.163441e-5
32	7994692	8153411	NM_015117	ZC3H3	0.499391	5.863194e-8	1.015916e-3	3.174736e-5
33	7994692	8060030	NM_006037	HDAC4	0.498771	6.124899e-8	1.061261e-3	3.215943e-5
34	7994692	8060353	NM_031229	RBCK1	0.498310	6.326055e-8	1.096116e-3	3.223869e-5
35	7994692	8132305	NM_030636	EEPD1	0.497133	6.869665e-8	1.190307e-3	3.400877e-5
36	7994692	7984943	NM_021823	PPCDC	0.495855	7.510170e-8	1.301287e-3	3.614687e-5
37	7994692	8072894	NM_001039141	TRIOBP	0.494746	8.111684e-8	1.405512e-3	3.798680e-5
38	7994692	8074432	NM_003325	HIRA	0.492705	9.340947e-8	1.618506e-3	4.259226e-5
39	7994692	8099362	ENST00000411154		0.490907	1.056938e-7	1.831357e-3	4.695786e-5
40	7994692	8080226	NM_015512	DNAH1	0.490285	1.102915e-7	1.911020e-3	4.777551e-5
41	7994692	8004431	NM_000937	POLR2A	0.489041	1.200562e-7	2.080214e-3	5.073693e-5
42	7994692	8128737	NM_022765	MICAL1	0.487937	1.294207e-7	2.242473e-3	5.339221e-5
43	7994692	8031122	NM_014516	CNOT3	0.487915	1.296142e-7	2.245825e-3	5.222849e-5
44	7994692	7930074	NM_002502	NFKB2	0.485545	1.521301e-7	2.635959e-3	5.990815e-5
45	7994692	7928411	NM_015037	KIAA0913	0.485451	1.530981e-7	2.652730e-3	5.894956e-5
46	7994692	8027074	NM_002911	UPF1	0.483415	1.755173e-7	3.041188e-3	6.611277e-5
47	7994692	8010638	NM_004712	HGS	0.483132	1.788709e-7	3.099296e-3	6.594246e-5
48	7994692	8032157	NM_014963	SBNO2	0.482357	1.883694e-7	3.263876e-3	6.799742e-5
49	7994692	7923233	NM_017596	KIF21B	0.480523	2.127907e-7	3.687025e-3	7.524540e-5
50	7994692	8026170	NM_030818	CCDC130	0.479702	2.246757e-7	3.892956e-3	7.785912e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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