[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
7218	8117861	NR_027822	HLA-L		major histocompatibility complex, class I, L, pseudogene
7219	8179080	NR_027822	HLA-L		major histocompatibility complex, class I, L, pseudogene

Fetching correlation data, please wait...
Getting list of correlations for id 7218.
Getting list of p-values for id 7218.
1 of 2 done.
Getting list of correlations for id 7219.
Getting list of p-values for id 7219.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.142 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8179080	8117861	NR_027822	HLA-L	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8117861	8179080	NR_027822	HLA-L	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8179080	8117777	NM_002127	HLA-G	0.654791	3.544290e-14	1.228238e-9	4.094127e-10
4	8117861	8117777	NM_002127	HLA-G	0.654791	3.544290e-14	1.228238e-9	3.070595e-10
5	8117861	8178498	NM_005514	HLA-B	0.642442	1.499794e-13	5.197386e-9	1.039477e-9
6	8179080	8178498	NM_005514	HLA-B	0.642442	1.499794e-13	5.197386e-9	8.662309e-10
7	8117861	8124911	NM_005514	HLA-B	0.641199	1.727786e-13	5.987468e-9	8.553526e-10
8	8179080	8124911	NM_005514	HLA-B	0.641199	1.727786e-13	5.987468e-9	7.484336e-10
9	8179080	8179103	NM_005516	HLA-E	0.623620	1.196754e-12	4.147230e-8	4.608033e-9
10	8117861	8179103	NM_005516	HLA-E	0.623620	1.196754e-12	4.147230e-8	4.147230e-9
11	8117861	8177788	NM_005516	HLA-E	0.623620	1.196754e-12	4.147230e-8	3.770209e-9
12	8179080	8177788	NM_005516	HLA-E	0.623620	1.196754e-12	4.147230e-8	3.456025e-9
13	8179080	8117890	NM_005516	HLA-E	0.622474	1.351872e-12	4.684776e-8	3.603674e-9
14	8117861	8117890	NM_005516	HLA-E	0.622474	1.351872e-12	4.684776e-8	3.346268e-9
15	8117861	8179731			0.621120	1.560530e-12	5.407860e-8	3.605240e-9
16	8179080	8179731			0.621120	1.560530e-12	5.407860e-8	3.379912e-9
17	8117861	8177732	NM_002116	HLA-A	0.616129	2.632386e-12	9.122270e-8	5.366041e-9
18	8179080	8177732	NM_002116	HLA-A	0.616129	2.632386e-12	9.122270e-8	5.067928e-9
19	8117861	8124901	NM_002117	HLA-C	0.606838	6.800947e-12	2.356800e-7	1.240421e-8
20	8179080	8124901	NM_002117	HLA-C	0.606838	6.800947e-12	2.356800e-7	1.178400e-8
21	8179080	8178489			0.597008	1.796395e-11	6.225228e-7	2.964394e-8
22	8117861	8178489			0.597008	1.796395e-11	6.225228e-7	2.829649e-8
23	8179080	8179041			0.596150	1.952327e-11	6.765593e-7	2.941562e-8
24	8117861	8179041			0.596150	1.952327e-11	6.765593e-7	2.818997e-8
25	8179080	8035380	NM_005535	IL12RB1	0.592803	2.694744e-11	9.338366e-7	3.735346e-8
26	8117861	8035380	NM_005535	IL12RB1	0.592803	2.694744e-11	9.338366e-7	3.591679e-8
27	8179080	8010770	NM_001042422	SLC16A3	0.582333	7.213510e-11	2.499770e-6	9.258406e-8
28	8117861	8010770	NM_001042422	SLC16A3	0.582333	7.213510e-11	2.499770e-6	8.927749e-8
29	8117861	8117800	NM_002116	HLA-A	0.578719	1.005248e-10	3.483587e-6	1.201237e-7
30	8179080	8117800	NM_002116	HLA-A	0.578719	1.005248e-10	3.483587e-6	1.161196e-7
31	8179080	8177725	NM_002127	HLA-G	0.567033	2.860569e-10	9.913015e-6	3.197747e-7
32	8179080	8179034	NM_002127	HLA-G	0.567033	2.860569e-10	9.913015e-6	3.097817e-7
33	8117861	8177725	NM_002127	HLA-G	0.567033	2.860569e-10	9.913015e-6	3.003944e-7
34	8117861	8179034	NM_002127	HLA-G	0.567033	2.860569e-10	9.913015e-6	2.915593e-7
35	8179080	8042917	NM_001381	DOK1	0.565024	3.410282e-10	1.181799e-5	3.376569e-7
36	8117861	8042917	NM_001381	DOK1	0.565024	3.410282e-10	1.181799e-5	3.282776e-7
37	8179080	8126666	NM_004556	NFKBIE	0.562894	4.103291e-10	1.421954e-5	3.843120e-7
38	8117861	8126666	NM_004556	NFKBIE	0.562894	4.103291e-10	1.421954e-5	3.741985e-7
39	8179080	8117813	NR_024240	HLA-J	0.560944	4.854920e-10	1.682424e-5	4.313907e-7
40	8117861	8117813	NR_024240	HLA-J	0.560944	4.854920e-10	1.682424e-5	4.206060e-7
41	8117861	7911730	NM_018216	PANK4	0.557159	6.708872e-10	2.324893e-5	5.670470e-7
42	8179080	7911730	NM_018216	PANK4	0.557159	6.708872e-10	2.324893e-5	5.535458e-7
43	8179080	8177955	NM_005931	MICB	0.542560	2.250518e-9	7.798944e-5	1.813708e-6
44	8117861	8177955	NM_005931	MICB	0.542560	2.250518e-9	7.798944e-5	1.772487e-6
45	8117861	8060353	NM_031229	RBCK1	0.532077	5.182098e-9	1.795804e-4	3.990676e-6
46	8179080	8060353	NM_031229	RBCK1	0.532077	5.182098e-9	1.795804e-4	3.903922e-6
47	8117861	8177717	NM_018950	HLA-F	0.531397	5.465023e-9	1.893849e-4	4.029466e-6
48	8179080	8177717	NM_018950	HLA-F	0.531397	5.465023e-9	1.893849e-4	3.945519e-6
49	8179080	8002133	NM_002801	PSMB10	0.529131	6.517969e-9	2.258737e-4	4.609667e-6
50	8117861	8002133	NM_002801	PSMB10	0.529131	6.517969e-9	2.258737e-4	4.517474e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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