[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5168	8038861	NM_001245	SIGLEC6		sialic acid binding Ig-like lectin 6

Fetching correlation data, please wait...
Getting list of correlations for id 5168.
Getting list of p-values for id 5168.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.139 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8038861	7933498	ENST00000311787		0.678216	1.894951e-15	3.283382e-11	3.283382e-11
2	8038861	8115849			0.674234	3.176720e-15	5.504302e-11	2.752151e-11
3	8038861	7986960	NM_015307	FAM189A1	0.653361	4.202715e-14	7.282045e-10	2.427348e-10
4	8038861	8019585	NM_030966	KRTAP1-3	0.648624	7.345065e-14	1.272679e-9	3.181698e-10
5	8038861	8015189	NM_030966	KRTAP1-3	0.648624	7.345065e-14	1.272679e-9	2.545359e-10
6	8038861	7949873	NM_080658	ACY3	0.644009	1.253411e-13	2.171785e-9	3.619641e-10
7	8038861	8165416	NM_203468	ENTPD2	0.635867	3.148639e-13	5.455647e-9	7.793782e-10
8	8038861	7951859	NM_000482	APOA4	0.631565	5.066575e-13	8.778854e-9	1.097357e-9
9	8038861	8172573	NM_003179	SYP	0.629870	6.099198e-13	1.056808e-8	1.174231e-9
10	8038861	7896921	NM_152228	TAS1R3	0.629775	6.162723e-13	1.067815e-8	1.067815e-9
11	8038861	7900129	NM_024676	C1orf113	0.628193	7.319091e-13	1.268179e-8	1.152890e-9
12	8038861	8038670	NM_012427	KLK5	0.619948	1.765821e-12	3.059639e-8	2.549699e-9
13	8038861	8137215	NM_001142928	LRRC61	0.616886	2.433044e-12	4.215735e-8	3.242873e-9
14	8038861	8072346	NM_016498	MTFP1	0.616649	2.493866e-12	4.321122e-8	3.086516e-9
15	8038861	7912316	NM_001079843	CASZ1	0.611533	4.226118e-12	7.322594e-8	4.881729e-9
16	8038861	7987701	NM_016642	SPTBN5	0.609402	5.249536e-12	9.095870e-8	5.684919e-9
17	8038861	8077192	NM_000482	APOA4	0.608957	5.491627e-12	9.515341e-8	5.597260e-9
18	8038861	8046922	NM_000090	COL3A1	0.608932	5.505579e-12	9.539517e-8	5.299732e-9
19	8038861	7938059	NM_001005174	OR52N2	0.607730	6.217046e-12	1.077228e-7	5.669619e-9
20	8038861	8164937	BC146946	FAM163B	0.607411	6.419945e-12	1.112384e-7	5.561919e-9
21	8038861	7913450	NM_005529	HSPG2	0.605344	7.899375e-12	1.368725e-7	6.517737e-9
22	8038861	8156247	NM_178828	C9orf79	0.602791	1.018550e-11	1.764842e-7	8.022007e-9
23	8038861	8088369			0.601792	1.124372e-11	1.948200e-7	8.470435e-9
24	8038861	7944447	NM_022169	ABCG4	0.599442	1.416707e-11	2.454728e-7	1.022803e-8
25	8038861	7973652	NM_174944	TSSK4	0.599284	1.438853e-11	2.493101e-7	9.972404e-9
26	8038861	7941074	NM_144585	SLC22A12	0.597725	1.675405e-11	2.902975e-7	1.116529e-8
27	8038861	8105523	NM_004520	KIF2A	-0.597686	1.681758e-11	2.913981e-7	1.079252e-8
28	8038861	7936762	NM_001001976	ATE1	-0.596045	1.972262e-11	3.417338e-7	1.220478e-8
29	8038861	8052380	ENST00000362525		0.594537	2.281340e-11	3.952878e-7	1.363061e-8
30	8038861	8025456	NM_001004456	OR1M1	0.593051	2.631547e-11	4.559682e-7	1.519894e-8
31	8038861	8170513	NM_033085	FATE1	0.592972	2.651299e-11	4.593905e-7	1.481905e-8
32	8038861	7954173	NM_007178	STRAP	-0.592577	2.753635e-11	4.771223e-7	1.491007e-8
33	8038861	8102695			0.592460	2.784645e-11	4.824954e-7	1.462107e-8
34	8038861	8120698	NM_133645	MTO1	-0.592367	2.809376e-11	4.867806e-7	1.431708e-8
35	8038861	8097146			0.592270	2.835579e-11	4.913208e-7	1.403774e-8
36	8038861	7914667	NM_052896	CSMD2	0.591698	2.994941e-11	5.189334e-7	1.441482e-8
37	8038861	8062064	NM_020884	MYH7B	0.590199	3.454003e-11	5.984751e-7	1.617500e-8
38	8038861	8068894	NR_026960	C21orf125	0.589722	3.613545e-11	6.261189e-7	1.647681e-8
39	8038861	8089729	NM_001015887	IGSF11	0.589407	3.723017e-11	6.450871e-7	1.654070e-8
40	8038861	8054020	BC038583	FAM178B	0.588948	3.888184e-11	6.737056e-7	1.684264e-8
41	8038861	8033674	NM_024690	MUC16	0.588517	4.049690e-11	7.016898e-7	1.711438e-8
42	8038861	7923929	NM_002644	PIGR	0.587614	4.409089e-11	7.639628e-7	1.818959e-8
43	8038861	8001971	NM_012163	LRRC29	0.585922	5.167591e-11	8.953884e-7	2.082299e-8
44	8038861	8069872	NM_175858	KRTAP11-1	0.585157	5.550220e-11	9.616867e-7	2.185652e-8
45	8038861	7918749	BC063894	DENND2C	0.584351	5.983004e-11	1.036675e-6	2.303722e-8
46	8038861	8034469	NM_032301	FBXW9	0.583673	6.371925e-11	1.104063e-6	2.400138e-8
47	8038861	8091637	NM_004733	SLC33A1	-0.583605	6.412106e-11	1.111026e-6	2.363884e-8
48	8038861	8170825	NM_001048181	OPN1MW2	0.583308	6.591192e-11	1.142056e-6	2.379283e-8
49	8038861	8156415	NM_006648	WNK2	0.583290	6.602453e-11	1.144007e-6	2.334708e-8
50	8038861	7960099	NM_170683	P2RX2	0.581272	7.955327e-11	1.378419e-6	2.756839e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation