[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5125	8038556	NM_004851	NAPSA		napsin A aspartic peptidase

Fetching correlation data, please wait...
Getting list of correlations for id 5125.
Getting list of p-values for id 5125.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.140 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8038556	8043283	NM_018433	KDM3A	-0.619277	1.894847e-12	3.283202e-8	3.283202e-8
2	8038556	8083094	NM_006506	RASA2	-0.617895	2.190101e-12	3.794787e-8	1.897394e-8
3	8038556	8150491	NM_001099412	MYST3	-0.612446	3.849045e-12	6.669240e-8	2.223080e-8
4	8038556	8087790	NM_004704	RRP9	0.605704	7.619745e-12	1.320273e-7	3.300683e-8
5	8038556	8044741			0.605127	8.072752e-12	1.398766e-7	2.797532e-8
6	8038556	7915333	NM_014747	RIMS3	0.602836	1.013954e-11	1.756878e-7	2.928130e-8
7	8038556	8093112	NM_015562	UBXN7	-0.598322	1.580632e-11	2.738760e-7	3.912515e-8
8	8038556	8022174			0.596863	1.821812e-11	3.156653e-7	3.945816e-8
9	8038556	8156295	NM_024077	SECISBP2	-0.593831	2.441786e-11	4.230882e-7	4.700980e-8
10	8038556	7922646	NM_022347	TOR1AIP2	-0.593108	2.617214e-11	4.534846e-7	4.534846e-8
11	8038556	8003758	NM_000430	PAFAH1B1	-0.592293	2.829375e-11	4.902457e-7	4.456779e-8
12	8038556	8106418	NM_001882	CRHBP	0.590210	3.450346e-11	5.978414e-7	4.982012e-8
13	8038556	8079021	NM_001904	CTNNB1	-0.590205	3.452038e-11	5.981346e-7	4.601036e-8
14	8038556	8129522	NM_004830	MED23	-0.590042	3.505682e-11	6.074295e-7	4.338782e-8
15	8038556	8151149	NM_006421	ARFGEF1	-0.588713	3.975606e-11	6.888532e-7	4.592355e-8
16	8038556	8048980	NM_016289	CAB39	-0.585810	5.221804e-11	9.047819e-7	5.654887e-8
17	8038556	7956120	NM_001982	ERBB3	0.585211	5.522510e-11	9.568853e-7	5.628737e-8
18	8038556	7930454	NM_145341	PDCD4	-0.584496	5.903000e-11	1.022813e-6	5.682294e-8
19	8038556	7931405	NM_018461	PPP2R2D	-0.582870	6.864105e-11	1.189344e-6	6.259703e-8
20	8038556	7995631	NM_005611	RBL2	-0.581982	7.451690e-11	1.291154e-6	6.455772e-8
21	8038556	7910638	ENST00000410639		0.581544	7.758360e-11	1.344291e-6	6.401386e-8
22	8038556	8067011	NM_015339	ADNP	-0.580896	8.235197e-11	1.426913e-6	6.485966e-8
23	8038556	8100714	NM_001031732	YTHDC1	-0.580829	8.286567e-11	1.435813e-6	6.242667e-8
24	8038556	7988753	NM_032802	SPPL2A	-0.580311	8.690258e-11	1.505761e-6	6.274004e-8
25	8038556	8038547	NR_002798	NAPSB	0.579439	9.412692e-11	1.630937e-6	6.523749e-8
26	8038556	8100902	NM_032217	ANKRD17	-0.579412	9.435711e-11	1.634926e-6	6.288175e-8
27	8038556	8085815	NM_001068	TOP2B	-0.578032	1.070251e-10	1.854424e-6	6.868237e-8
28	8038556	8009382	NM_004459	BPTF	-0.577563	1.116853e-10	1.935171e-6	6.911326e-8
29	8038556	8014650	NM_006310	NPEPPS	-0.577512	1.122117e-10	1.944293e-6	6.704458e-8
30	8038556	8049532	NM_001137550	LRRFIP1	-0.577247	1.149478e-10	1.991700e-6	6.639001e-8
31	8038556	8051443	NM_003162	STRN	-0.576469	1.233515e-10	2.137312e-6	6.894555e-8
32	8038556	8104463	NM_005885	MARCH6	-0.576151	1.269443e-10	2.199564e-6	6.873638e-8
33	8038556	8017776	NM_014877	HELZ	-0.575559	1.339244e-10	2.320509e-6	7.031845e-8
34	8038556	8138670	NM_031243	HNRNPA2B1	-0.575231	1.379483e-10	2.390230e-6	7.030088e-8
35	8038556	7927854	NM_012207	HNRNPH3	-0.574991	1.409632e-10	2.442469e-6	6.978483e-8
36	8038556	8086706	NM_014159	SETD2	-0.574821	1.431440e-10	2.480256e-6	6.889599e-8
37	8038556	8129773	NM_014739	BCLAF1	-0.573481	1.614585e-10	2.797591e-6	7.561057e-8
38	8038556	8011626	NM_003342	UBE2G1	-0.573030	1.681159e-10	2.912943e-6	7.665641e-8
39	8038556	7982377	NM_013372	GREM1	0.572426	1.774462e-10	3.074610e-6	7.883614e-8
40	8038556	8169949	NM_016542	MST4	-0.572017	1.840524e-10	3.189076e-6	7.972689e-8
41	8038556	8001748	NR_002980	SNORA50	-0.571188	1.981612e-10	3.433540e-6	8.374487e-8
42	8038556	8087935	NM_022908	NT5DC2	0.570702	2.069096e-10	3.585123e-6	8.536008e-8
43	8038556	8002470	NM_032821	HYDIN	0.570321	2.140290e-10	3.708481e-6	8.624374e-8
44	8038556	8095269	NM_000938	POLR2B	-0.570189	2.165581e-10	3.752302e-6	8.527960e-8
45	8038556	8052443	NM_014709	USP34	-0.569861	2.229465e-10	3.862994e-6	8.584430e-8
46	8038556	8024013	BC052236	C19orf21	0.569405	2.321316e-10	4.022144e-6	8.743792e-8
47	8038556	8101228	NM_144571	CNOT6L	-0.568410	2.534399e-10	4.391353e-6	9.343304e-8
48	8038556	7967420	NM_018183	SBNO1	-0.568031	2.620361e-10	4.540300e-6	9.458957e-8
49	8038556	8003719	NM_001098202	HIC1	0.567838	2.665363e-10	4.618274e-6	9.425050e-8
50	8038556	7905881	NM_207196	ADAM15	0.567531	2.738230e-10	4.744532e-6	9.489063e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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