[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3369	7975482	NM_004296	RGS6		regulator of G-protein signaling 6

Fetching correlation data, please wait...
Getting list of correlations for id 3369.
Getting list of p-values for id 3369.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.112 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7975482	8026139	NM_002501	NFIX	0.597884	1.649616e-11	2.858290e-7	2.858290e-7
2	7975482	8025421	NM_016496	MARCH2	0.595701	2.038931e-11	3.532856e-7	1.766428e-7
3	7975482	8026122	NM_005053	RAD23A	0.593001	2.644097e-11	4.581426e-7	1.527142e-7
4	7975482	8171848	NM_004845	PCYT1B	0.587703	4.372656e-11	7.576501e-7	1.894125e-7
5	7975482	8073705	NM_181333	PRR5	0.579150	9.664462e-11	1.674561e-6	3.349123e-7
6	7975482	8034299	NM_032377	ELOF1	0.577824	1.090741e-10	1.889927e-6	3.149878e-7
7	7975482	8085393	NM_018306	TMEM40	0.572522	1.759367e-10	3.048455e-6	4.354936e-7
8	7975482	8117034	NM_006877	GMPR	0.568733	2.463093e-10	4.267801e-6	5.334752e-7
9	7975482	7921133	NM_004494	HDGF	0.562156	4.373559e-10	7.578066e-6	8.420074e-7
10	7975482	7924996	NM_032800	C1orf198	0.555331	7.831543e-10	1.356972e-5	1.356972e-6
11	7975482	8016018	NM_001143780	SLC25A39	0.553839	8.880098e-10	1.538655e-5	1.398777e-6
12	7975482	8116818	NM_001718	BMP6	0.552599	9.852207e-10	1.707092e-5	1.422577e-6
13	7975482	8023955	NM_001728	BSG	0.548483	1.386959e-9	2.403183e-5	1.848602e-6
14	7975482	8060379	NM_178578	PSMF1	0.546965	1.571608e-9	2.723125e-5	1.945089e-6
15	7975482	8025414	NM_004218	RAB11B	0.544566	1.912260e-9	3.313373e-5	2.208915e-6
16	7975482	8167360	NM_002049	GATA1	0.544000	2.002363e-9	3.469495e-5	2.168434e-6
17	7975482	8063478	NM_080821	C20orf108	0.542895	2.190229e-9	3.795010e-5	2.232359e-6
18	7975482	8156706	NM_003275	TMOD1	0.542505	2.260554e-9	3.916861e-5	2.176034e-6
19	7975482	8176174	NM_002436	MPP1	0.538121	3.215022e-9	5.570668e-5	2.931931e-6
20	7975482	8072382	NM_030758	OSBP2	0.537678	3.330599e-9	5.770928e-5	2.885464e-6
21	7975482	8150439	NM_020476	ANK1	0.537578	3.357043e-9	5.816749e-5	2.769880e-6
22	7975482	7976515	NM_016417	GLRX5	0.537577	3.357421e-9	5.817404e-5	2.644274e-6
23	7975482	8034608	NM_005583	LYL1	0.535979	3.811865e-9	6.604819e-5	2.871660e-6
24	7975482	8036913	NM_000713	BLVRB	0.535391	3.993244e-9	6.919094e-5	2.882956e-6
25	7975482	7998604	NM_005326	HAGH	0.534110	4.417820e-9	7.654757e-5	3.061903e-6
26	7975482	7911218	NM_015431	TRIM58	0.532643	4.957711e-9	8.590226e-5	3.303933e-6
27	7975482	7959173	NM_014868	RNF10	0.531418	5.455765e-9	9.453204e-5	3.501187e-6
28	7975482	8145005	NM_001978	EPB49	0.529607	6.281460e-9	1.088389e-4	3.887102e-6
29	7975482	8026895	NM_138442	CCDC124	0.529411	6.377796e-9	1.105081e-4	3.810623e-6
30	7975482	8034578	NM_006563	KLF1	0.528991	6.588774e-9	1.141637e-4	3.805456e-6
31	7975482	8131067	NM_138445	GPR146	0.528654	6.762640e-9	1.171763e-4	3.779880e-6
32	7975482	8039409	NM_173804	TMEM86B	0.528539	6.823459e-9	1.182301e-4	3.694690e-6
33	7975482	8090098	NM_053025	MYLK	0.528420	6.886263e-9	1.193183e-4	3.615705e-6
34	7975482	8100376			0.527556	7.361035e-9	1.275447e-4	3.751313e-6
35	7975482	8173135	NM_000032	ALAS2	0.527142	7.599850e-9	1.316826e-4	3.762360e-6
36	7975482	8071147	NM_018943	TUBA8	0.523682	9.904153e-9	1.716093e-4	4.766924e-6
37	7975482	8003298	NM_003486	SLC7A5	0.520517	1.258609e-8	2.180793e-4	5.894034e-6
38	7975482	7986246	ENST00000380748		0.519317	1.377460e-8	2.386724e-4	6.280853e-6
39	7975482	7911229	NM_001001957	OR2W3	0.518879	1.423441e-8	2.466396e-4	6.324092e-6
40	7975482	7911231	NM_001001957	OR2W3	0.518879	1.423441e-8	2.466396e-4	6.165990e-6
41	7975482	8072870	NM_020315	PDXP	0.518656	1.447506e-8	2.508093e-4	6.117300e-6
42	7975482	7942204	NM_005231	CTTN	0.518380	1.477687e-8	2.560389e-4	6.096164e-6
43	7975482	8025296	NM_174894	TRAPPC5	0.515329	1.854558e-8	3.213393e-4	7.473008e-6
44	7975482	8166819	ENST00000444706		0.514032	2.041208e-8	3.536801e-4	8.038185e-6
45	7975482	8092552	NM_006548	IGF2BP2	0.512714	2.249172e-8	3.897140e-4	8.660310e-6
46	7975482	8015991	NM_000342	SLC4A1	0.511370	2.482114e-8	4.300758e-4	9.349474e-6
47	7975482	8160756	NM_015397	DCAF12	0.508959	2.958836e-8	5.126775e-4	1.090803e-5
48	7975482	8024204	NM_000455	STK11	0.508320	3.099055e-8	5.369733e-4	1.118694e-5
49	7975482	8168205	NM_005938	FOXO4	0.507265	3.344668e-8	5.795307e-4	1.182716e-5
50	7975482	8057797	NM_004657	SDPR	0.507103	3.384155e-8	5.863725e-4	1.172745e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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