[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1501	8095187	NM_025009	CEP135		centrosomal protein 135kDa

Fetching correlation data, please wait...
Getting list of correlations for id 1501.
Getting list of p-values for id 1501.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.124 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8095187	8050443	NM_001142286	SMC6	0.755844	1.171809e-20	2.030393e-16	2.030393e-16
2	8095187	8140942	NM_001040057	FAM133B	0.750175	3.259209e-20	5.647231e-16	2.823616e-16
3	8095187	8105504	NM_152789	FAM133B	0.737784	2.779016e-19	4.815201e-15	1.605067e-15
4	8095187	8022393	NM_002828	PTPN2	0.736683	3.342118e-19	5.790888e-15	1.447722e-15
5	8095187	8173673	NM_000489	ATRX	0.734746	4.614476e-19	7.995502e-15	1.599100e-15
6	8095187	8135235	NM_004279	PMPCB	0.729979	1.008530e-18	1.747480e-14	2.912466e-15
7	8095187	7962590	NM_024604	RPAP3	0.726844	1.671481e-18	2.896175e-14	4.137393e-15
8	8095187	7980940	NM_004993	ATXN3	0.726726	1.703302e-18	2.951311e-14	3.689139e-15
9	8095187	8021015	NM_002647	PIK3C3	0.726540	1.754665e-18	3.040307e-14	3.378119e-15
10	8095187	8113733	NM_153223	CEP120	0.725221	2.165378e-18	3.751950e-14	3.751950e-15
11	8095187	8046759	NM_018981	DNAJC10	0.724927	2.268568e-18	3.930748e-14	3.573408e-15
12	8095187	8131519	NM_014660	PHF14	0.724884	2.284145e-18	3.957739e-14	3.298115e-15
13	8095187	7971967	NM_014953	DIS3	0.723689	2.759651e-18	4.781647e-14	3.678190e-15
14	8095187	8105633	NM_015342	PPWD1	0.721657	3.798149e-18	6.581053e-14	4.700752e-15
15	8095187	8090898	NM_005862	STAG1	0.721616	3.822434e-18	6.623131e-14	4.415421e-15
16	8095187	8091562	NM_020865	DHX36	0.719319	5.465039e-18	9.469272e-14	5.918295e-15
17	8095187	7962013	NM_016570	ERGIC2	0.718344	6.354070e-18	1.100970e-13	6.476293e-15
18	8095187	8047815	NM_001136194	FASTKD2	0.717520	7.213284e-18	1.249846e-13	6.943587e-15
19	8095187	8050658	NM_017552	ATAD2B	0.716270	8.736617e-18	1.513794e-13	7.967335e-15
20	8095187	7930422	NM_005445	SMC3	0.716191	8.842331e-18	1.532111e-13	7.660553e-15
21	8095187	7995552	NM_015247	CYLD	0.716147	8.901947e-18	1.542440e-13	7.344954e-15
22	8095187	7989885	NM_001031723	DNAJB14	0.715983	9.127372e-18	1.581500e-13	7.188635e-15
23	8095187	7917771	NM_014597	DNTTIP2	0.715671	9.572112e-18	1.658560e-13	7.211130e-15
24	8095187	7903908	NM_006090	CEPT1	0.715042	1.053477e-17	1.825359e-13	7.605664e-15
25	8095187	7965022	NM_007043	KRR1	0.714115	1.212626e-17	2.101118e-13	8.404470e-15
26	8095187	8155770	NM_015110	SMC5	0.713468	1.337368e-17	2.317258e-13	8.912531e-15
27	8095187	8135688	NM_016200	NAA38	0.712505	1.546172e-17	2.679052e-13	9.922414e-15
28	8095187	7951008	NM_024116	TAF1D	0.712320	1.589693e-17	2.754461e-13	9.837360e-15
29	8095187	8106303	NM_016218	POLK	0.711670	1.752732e-17	3.036958e-13	1.047227e-14
30	8095187	8130087	NM_139126	PPIL4	0.711508	1.795662e-17	3.111343e-13	1.037114e-14
31	8095187	7946635	NM_021211	ZBED5	0.711290	1.855404e-17	3.214859e-13	1.037051e-14
32	8095187	8046213	NM_172070	UBR3	0.710785	2.000656e-17	3.466537e-13	1.083293e-14
33	8095187	8046848	NM_018471	ZC3H15	0.710568	2.066757e-17	3.581070e-13	1.085173e-14
34	8095187	7938448	NM_017944	USP47	0.710458	2.100839e-17	3.640124e-13	1.070625e-14
35	8095187	8094719	NM_018177	N4BP2	0.710088	2.220057e-17	3.846692e-13	1.099055e-14
36	8095187	7970546	NM_152726	EFHA1	0.709586	2.391875e-17	4.144401e-13	1.151223e-14
37	8095187	7967304	NM_198261	RSRC2	0.709294	2.497882e-17	4.328080e-13	1.169751e-14
38	8095187	8006325	NM_015355	SUZ12	0.709008	2.606269e-17	4.515882e-13	1.188390e-14
39	8095187	8069711	NM_015565	RNF160	0.708217	2.929911e-17	5.076657e-13	1.301707e-14
40	8095187	7929562	NM_014803	ZNF518A	0.707805	3.113289e-17	5.394396e-13	1.348599e-14
41	8095187	7967881	NM_017520	MPHOSPH8	0.707735	3.145592e-17	5.450367e-13	1.329358e-14
42	8095187	8028186	NM_007145	ZNF146	0.707346	3.331324e-17	5.772186e-13	1.374330e-14
43	8095187	8134122	NM_005751	AKAP9	0.707160	3.423449e-17	5.931810e-13	1.379491e-14
44	8095187	8121118	NM_012115	CASP8AP2	0.706608	3.712748e-17	6.433079e-13	1.462063e-14
45	8095187	8020323	NM_003799	RNMT	0.706154	3.968389e-17	6.876028e-13	1.528006e-14
46	8095187	7951036	NR_003033	SNORD5	0.705953	4.086548e-17	7.080762e-13	1.539296e-14
47	8095187	7903407	NM_020978	AMY2B	0.705443	4.402969e-17	7.629025e-13	1.623197e-14
48	8095187	7908330	AY854248	C1orf27	0.705389	4.437852e-17	7.689466e-13	1.601972e-14
49	8095187	7903519	NM_018061	PRPF38B	0.705127	4.610757e-17	7.989058e-13	1.630420e-14
50	8095187	7974603	NM_002788	PSMA3	0.705004	4.694407e-17	8.133998e-13	1.626800e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation