[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2635	7900888	NM_014652	IPO13		importin 13

Fetching correlation data, please wait...
Getting list of correlations for id 2635.
Getting list of p-values for id 2635.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.116 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7900888	7990417	NM_005697	SCAMP2	0.569805	2.240518e-10	3.882145e-6	3.882145e-6
2	7900888	8141425	NM_005641	TAF6	0.567827	2.667878e-10	4.622631e-6	2.311316e-6
3	7900888	7996685	NM_014329	EDC4	0.565221	3.352159e-10	5.808287e-6	1.936096e-6
4	7900888	8063097	NM_022104	PCIF1	0.561038	4.815881e-10	8.344477e-6	2.086119e-6
5	7900888	7967202	NM_019034	RHOF	0.557060	6.765383e-10	1.172238e-5	2.344476e-6
6	7900888	8062981	NM_015937	PIGT	0.556951	6.828269e-10	1.183134e-5	1.971890e-6
7	7900888	8049689	NM_018226	RNPEPL1	0.554076	8.704605e-10	1.508247e-5	2.154639e-6
8	7900888	8116348	NM_198868	TBC1D9B	0.553580	9.075438e-10	1.572501e-5	1.965626e-6
9	7900888	8145085	NM_001722	POLR3D	0.552142	1.023609e-9	1.773608e-5	1.970675e-6
10	7900888	7968890	NM_003646	DGKZ	0.547711	1.478026e-9	2.560976e-5	2.560976e-6
11	7900888	8026315	NM_213560	PKN1	0.546464	1.637499e-9	2.837294e-5	2.579358e-6
12	7900888	8077595	NM_001003694	BRPF1	0.546160	1.678853e-9	2.908949e-5	2.424124e-6
13	7900888	8087833	NM_001947	DUSP7	0.538324	3.163263e-9	5.480986e-5	4.216143e-6
14	7900888	8029147	NM_199002	ARHGEF1	0.530122	6.035313e-9	1.045739e-4	7.469561e-6
15	7900888	8009796	NM_014738	KIAA0195	0.525929	8.342054e-9	1.445428e-4	9.636185e-6
16	7900888	8160682	NM_022917	NOL6	0.525746	8.459853e-9	1.465839e-4	9.161492e-6
17	7900888	8040753	NM_017727	TMEM214	0.524458	9.335079e-9	1.617489e-4	9.514642e-6
18	7900888	8035737	NM_020410	ATP13A1	0.522914	1.049922e-8	1.819199e-4	1.010666e-5
19	7900888	8032871	NM_139159	DPP9	0.522622	1.073483e-8	1.860023e-4	9.789596e-6
20	7900888	8066641	NM_022095	ZNF335	0.521422	1.175603e-8	2.036967e-4	1.018484e-5
21	7900888	7906671	NM_001014443	USP21	0.516835	1.658226e-8	2.873209e-4	1.368195e-5
22	7900888	8010212	NM_152468	TMC8	0.515746	1.797998e-8	3.115391e-4	1.416087e-5
23	7900888	8076137	NM_015374	SUN2	0.513312	2.152427e-8	3.729511e-4	1.621526e-5
24	7900888	8076176	NM_014292	CBX6	0.512770	2.239854e-8	3.880995e-4	1.617081e-5
25	7900888	7949465	NM_021975	RELA	0.511803	2.404620e-8	4.166485e-4	1.666594e-5
26	7900888	8087739	NM_013324	CISH	0.508324	3.098253e-8	5.368343e-4	2.064747e-5
27	7900888	8026272	NM_004843	IL27RA	0.507680	3.246003e-8	5.624349e-4	2.083092e-5
28	7900888	8033207	NM_024898	DENND1C	0.506174	3.618413e-8	6.269623e-4	2.239151e-5
29	7900888	8002421	NM_018052	VAC14	0.505994	3.665453e-8	6.351131e-4	2.190045e-5
30	7900888	8013860	NM_078471	MYO18A	0.502329	4.763343e-8	8.253445e-4	2.751148e-5
31	7900888	8167125	NM_004651	USP11	0.499238	5.926941e-8	1.026961e-3	3.312777e-5
32	7900888	8170704	NM_000033	ABCD1	0.498344	6.311223e-8	1.093546e-3	3.417330e-5
33	7900888	8034482	NM_001136196	TNPO2	0.497074	6.898219e-8	1.195254e-3	3.621983e-5
34	7900888	7944418	NM_014807	C2CD2L	0.496608	7.126061e-8	1.234733e-3	3.631567e-5
35	7900888	8006788	NM_005937	MLLT6	0.495063	7.935141e-8	1.374922e-3	3.928348e-5
36	7900888	8071768	NM_003073	SMARCB1	0.493508	8.837661e-8	1.531301e-3	4.253615e-5
37	7900888	8010161	NM_006640	SEPT9	0.492524	9.458246e-8	1.638830e-3	4.429271e-5
38	7900888	8158725	NM_005157	ABL1	0.491894	9.876761e-8	1.711346e-3	4.503543e-5
39	7900888	7897648	NM_004565	PEX14	0.491854	9.903929e-8	1.716054e-3	4.400138e-5
40	7900888	8140297	NM_001099415	POM121C	0.490135	1.114208e-7	1.930589e-3	4.826472e-5
41	7900888	8041826	NM_020458	TTC7A	0.489339	1.176466e-7	2.038462e-3	4.971860e-5
42	7900888	7977344	NM_001100913	PACS2	0.487611	1.323115e-7	2.292561e-3	5.458477e-5
43	7900888	8080320	NM_007184	NISCH	0.487042	1.375121e-7	2.382672e-3	5.541097e-5
44	7900888	8016194	NM_003954	MAP3K14	0.485657	1.509962e-7	2.616311e-3	5.946162e-5
45	7900888	8076998	NM_012401	PLXNB2	0.485018	1.576314e-7	2.731278e-3	6.069508e-5
46	7900888	8025788	NM_001128849	SMARCA4	0.484859	1.593218e-7	2.760569e-3	6.001237e-5
47	7900888	8012197	NM_020360	PLSCR3	0.484199	1.665344e-7	2.885541e-3	6.139448e-5
48	7900888	7919950	NM_002651	PI4KB	0.484122	1.674065e-7	2.900653e-3	6.043026e-5
49	7900888	8028916	NM_004596	SNRPA	0.484092	1.677434e-7	2.906491e-3	5.931613e-5
50	7900888	7999120	NM_024535	CORO7	0.483997	1.688099e-7	2.924970e-3	5.849940e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation