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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
970 8002444 AK128439 VAC14 link to infopage Vac14 homolog (S. cerevisiae)
8263 8002421 NM_018052 VAC14 link to infopage Vac14 homolog (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 970.
Getting list of p-values for id 970.
1 of 2 done.
Getting list of correlations for id 8263.
Getting list of p-values for id 8263.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.182 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8002421 8043666 NM_017623 CNNM3 link to infopage 0.650177 6.123132e-14 2.121910e-9 2.121910e-9
2 8002421 8071768 NM_003073 SMARCB1 link to infopage 0.622752 1.312575e-12 4.548596e-8 2.274298e-8
3 8002421 7912112 NM_018198 DNAJC11 link to infopage 0.621943 1.430235e-12 4.956336e-8 1.652112e-8
4 8002421 7941694 NM_006328 RBM14 link to infopage 0.620640 1.641557e-12 5.688650e-8 1.422163e-8
5 8002421 8071823 NM_012295 CABIN1 link to infopage 0.616551 2.519427e-12 8.730823e-8 1.746165e-8
6 8002421 7968890 NM_003646 DGKZ link to infopage 0.611688 4.159576e-12 1.441459e-7 2.402432e-8
7 8002421 8076137 NM_015374 SUN2 link to infopage 0.611275 4.338780e-12 1.503561e-7 2.147944e-8
8 8002421 8013860 NM_078471 MYO18A link to infopage 0.604000 9.033279e-12 3.130393e-7 3.912991e-8
9 8002421 8041826 NM_020458 TTC7A link to infopage 0.597808 1.661788e-11 5.758761e-7 6.398623e-8
10 8002421 8158725 NM_005157 ABL1 link to infopage 0.595847 2.010412e-11 6.966880e-7 6.966880e-8
11 8002421 7996685 NM_014329 EDC4 link to infopage 0.593103 2.618255e-11 9.073302e-7 8.248457e-8
12 8002421 8040753 NM_017727 TMEM214 link to infopage 0.586680 4.813585e-11 1.668100e-6 1.390083e-7
13 8002421 8048175 NM_014140 SMARCAL1 link to infopage 0.585574 5.338575e-11 1.850030e-6 1.423100e-7
14 8002421 8076056 NM_001894 CSNK1E link to infopage 0.585256 5.499450e-11 1.905779e-6 1.361271e-7
15 8002421 7906671 NM_001014443 USP21 link to infopage 0.580775 8.327671e-11 2.885871e-6 1.923914e-7
16 8002421 7991258 NM_002693 POLG link to infopage 0.579004 9.794187e-11 3.394078e-6 2.121299e-7
17 8002421 8065444 NM_032501 ACSS1 link to infopage 0.576546 1.224941e-10 4.244910e-6 2.497006e-7
18 8002421 7998983 NM_178844 NLRC3 link to infopage 0.574680 1.449722e-10 5.023868e-6 2.791038e-7
19 8002421 8085431 NM_024923 NUP210 link to infopage 0.574414 1.484824e-10 5.145507e-6 2.708162e-7
20 8002421 8048304 NM_021198 CTDSP1 link to infopage 0.574074 1.530977e-10 5.305448e-6 2.652724e-7
21 8002421 8163569 NM_030767 AKNA link to infopage 0.573209 1.654506e-10 5.733526e-6 2.730250e-7
22 8002421 8016194 NM_003954 MAP3K14 link to infopage 0.570264 2.151090e-10 7.454386e-6 3.388357e-7
23 8002421 8049689 NM_018226 RNPEPL1 link to infopage 0.569692 2.263020e-10 7.842269e-6 3.409682e-7
24 8002421 8032871 NM_139159 DPP9 link to infopage 0.569076 2.389717e-10 8.281327e-6 3.450553e-7
25 8002421 7967202 NM_019034 RHOF link to infopage 0.568025 2.621802e-10 9.085593e-6 3.634237e-7
26 8002421 8011516 NM_174954 ATP2A3 link to infopage 0.567005 2.867713e-10 9.937773e-6 3.822220e-7
27 8002421 8005171 NM_016113 TRPV2 link to infopage 0.564182 3.669469e-10 1.271618e-5 4.709696e-7
28 8002421 8025788 NM_001128849 SMARCA4 link to infopage 0.562821 4.129032e-10 1.430875e-5 5.110267e-7
29 8002421 7935968 NM_003893 LDB1 link to infopage 0.561768 4.522399e-10 1.567192e-5 5.404110e-7
30 8002421 8013486 NM_015276 USP22 link to infopage 0.560971 4.843720e-10 1.678543e-5 5.595142e-7
31 8002421 8075217 NM_001127 AP1B1 link to infopage 0.559025 5.722739e-10 1.983158e-5 6.397284e-7
32 8002421 8049317 NM_152879 DGKD link to infopage 0.556984 6.809118e-10 2.359632e-5 7.373850e-7
33 8002421 8071392 NM_001003891 MED15 link to infopage 0.556270 7.233797e-10 2.506800e-5 7.596363e-7
34 8002421 8025142 NM_001130955 ARHGEF18 link to infopage 0.556117 7.328509e-10 2.539621e-5 7.469475e-7
35 8002421 7912412 NM_004958 MTOR link to infopage 0.553868 8.858378e-10 3.069782e-5 8.770807e-7
36 8002421 8145085 NM_001722 POLR3D link to infopage 0.553770 8.931930e-10 3.095271e-5 8.597976e-7
37 8002421 8090351 NM_025112 ZXDC link to infopage 0.552912 9.598086e-10 3.326121e-5 8.989516e-7
38 8002421 7929634 NM_198046 ZDHHC16 link to infopage 0.551737 1.058772e-9 3.669069e-5 9.655444e-7
39 8002421 8012257 NM_000546 TP53 link to infopage 0.551687 1.063209e-9 3.684445e-5 9.447295e-7
40 8002421 8077595 NM_001003694 BRPF1 link to infopage 0.550443 1.179190e-9 4.086365e-5 1.021591e-6
41 8002421 8133167 NM_153033 KCTD7 link to infopage 0.549804 1.243389e-9 4.308841e-5 1.050937e-6
42 8002421 8031176 NM_052925 LENG8 link to infopage 0.549579 1.266807e-9 4.389994e-5 1.045237e-6
43 8002421 8026272 NM_004843 IL27RA link to infopage 0.548520 1.382723e-9 4.791689e-5 1.114346e-6
44 8002421 8068810 NM_018964 SLC37A1 link to infopage 0.547639 1.486885e-9 5.152653e-5 1.171057e-6
45 8002421 8026548 NM_001130524 AP1M1 link to infopage 0.546722 1.603237e-9 5.555856e-5 1.234635e-6
46 8002421 7949465 NM_021975 RELA link to infopage 0.545031 1.841090e-9 6.380114e-5 1.386981e-6
47 8002421 8177797 NM_001025091 ABCF1 link to infopage 0.543064 2.160433e-9 7.486765e-5 1.592929e-6
48 8002421 8179112 NM_001025091 ABCF1 link to infopage 0.543064 2.160433e-9 7.486765e-5 1.559743e-6
49 8002421 8117929 NM_001025091 ABCF1 link to infopage 0.543064 2.160433e-9 7.486765e-5 1.527911e-6
50 8002421 8125172 NM_006709 EHMT2 link to infopage 0.542413 2.277403e-9 7.892112e-5 1.578422e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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