[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
12200	8117929	NM_001025091	ABCF1		ATP-binding cassette, sub-family F (GCN20), member 1
12201	8177797	NM_001025091	ABCF1		ATP-binding cassette, sub-family F (GCN20), member 1
12202	8179112	NM_001025091	ABCF1		ATP-binding cassette, sub-family F (GCN20), member 1

Fetching correlation data, please wait...
Getting list of correlations for id 12200.
Getting list of p-values for id 12200.
1 of 3 done.
Getting list of correlations for id 12201.
Getting list of p-values for id 12201.
2 of 3 done.
Getting list of correlations for id 12202.
Getting list of p-values for id 12202.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.239 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8177797	8117929	NM_001025091	ABCF1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8117929	8179112	NM_001025091	ABCF1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8179112	8117929	NM_001025091	ABCF1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	8117929	8177797	NM_001025091	ABCF1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	8179112	8177797	NM_001025091	ABCF1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	8177797	8179112	NM_001025091	ABCF1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	8179112	8030881	NM_014225	PPP2R1A	0.799698	1.475197e-24	7.668224e-20	1.095461e-20
8	8177797	8030881	NM_014225	PPP2R1A	0.799698	1.475197e-24	7.668224e-20	9.585280e-21
9	8117929	8030881	NM_014225	PPP2R1A	0.799698	1.475197e-24	7.668224e-20	8.520249e-21
10	8117929	8027621	NM_000175	GPI	0.751058	2.783957e-20	1.447129e-15	1.447129e-16
11	8179112	8027621	NM_000175	GPI	0.751058	2.783957e-20	1.447129e-15	1.315572e-16
12	8177797	8027621	NM_000175	GPI	0.751058	2.783957e-20	1.447129e-15	1.205941e-16
13	8179112	7963614	NM_000889	ITGB7	0.742882	1.167862e-19	6.070665e-15	4.669743e-16
14	8117929	7963614	NM_000889	ITGB7	0.742882	1.167862e-19	6.070665e-15	4.336190e-16
15	8177797	7963614	NM_000889	ITGB7	0.742882	1.167862e-19	6.070665e-15	4.047110e-16
16	8117929	7948744	NM_198335	GANAB	0.735246	4.246568e-19	2.207409e-14	1.379630e-15
17	8179112	7948744	NM_198335	GANAB	0.735246	4.246568e-19	2.207409e-14	1.298476e-15
18	8177797	7948744	NM_198335	GANAB	0.735246	4.246568e-19	2.207409e-14	1.226338e-15
19	8117929	8158112	NM_001261	CDK9	0.732681	6.487469e-19	3.372251e-14	1.774869e-15
20	8177797	8158112	NM_001261	CDK9	0.732681	6.487469e-19	3.372251e-14	1.686126e-15
21	8179112	8158112	NM_001261	CDK9	0.732681	6.487469e-19	3.372251e-14	1.605834e-15
22	8177797	7956166	NM_015292	ESYT1	0.728289	1.325403e-18	6.889577e-14	3.131626e-15
23	8117929	7956166	NM_015292	ESYT1	0.728289	1.325403e-18	6.889577e-14	2.995468e-15
24	8179112	7956166	NM_015292	ESYT1	0.728289	1.325403e-18	6.889577e-14	2.870657e-15
25	8177797	8016099	NM_004247	EFTUD2	0.723793	2.715008e-18	1.411288e-13	5.645153e-15
26	8117929	8016099	NM_004247	EFTUD2	0.723793	2.715008e-18	1.411288e-13	5.428032e-15
27	8179112	8016099	NM_004247	EFTUD2	0.723793	2.715008e-18	1.411288e-13	5.226994e-15
28	8117929	7972946	NM_007368	RASA3	0.721536	3.870583e-18	2.011968e-13	7.185600e-15
29	8179112	7972946	NM_007368	RASA3	0.721536	3.870583e-18	2.011968e-13	6.937821e-15
30	8177797	7972946	NM_007368	RASA3	0.721536	3.870583e-18	2.011968e-13	6.706560e-15
31	8179112	8007715	NM_021079	NMT1	0.715063	1.050077e-17	5.458405e-13	1.760776e-14
32	8177797	8007715	NM_021079	NMT1	0.715063	1.050077e-17	5.458405e-13	1.705751e-14
33	8117929	8007715	NM_021079	NMT1	0.715063	1.050077e-17	5.458405e-13	1.654062e-14
34	8117929	7948696	NM_004739	MTA2	0.713603	1.310278e-17	6.810955e-13	2.003222e-14
35	8177797	7948696	NM_004739	MTA2	0.713603	1.310278e-17	6.810955e-13	1.945987e-14
36	8179112	7948696	NM_004739	MTA2	0.713603	1.310278e-17	6.810955e-13	1.891932e-14
37	8179112	7941511	NM_006842	SF3B2	0.710078	2.223347e-17	1.155718e-12	3.123562e-14
38	8177797	7941511	NM_006842	SF3B2	0.710078	2.223347e-17	1.155718e-12	3.041363e-14
39	8117929	7941511	NM_006842	SF3B2	0.710078	2.223347e-17	1.155718e-12	2.963379e-14
40	8177797	7948192	NM_003146	SSRP1	0.697144	1.449022e-16	7.532162e-12	1.883041e-13
41	8179112	7948192	NM_003146	SSRP1	0.697144	1.449022e-16	7.532162e-12	1.837113e-13
42	8117929	7948192	NM_003146	SSRP1	0.697144	1.449022e-16	7.532162e-12	1.793372e-13
43	8179112	8157283	NM_004697	PRPF4	0.696981	1.482578e-16	7.706590e-12	1.792230e-13
44	8117929	8157283	NM_004697	PRPF4	0.696981	1.482578e-16	7.706590e-12	1.751498e-13
45	8177797	8157283	NM_004697	PRPF4	0.696981	1.482578e-16	7.706590e-12	1.712576e-13
46	8179112	7941214	NM_002689	POLA2	0.695138	1.920636e-16	9.983660e-12	2.170361e-13
47	8177797	7941214	NM_002689	POLA2	0.695138	1.920636e-16	9.983660e-12	2.124183e-13
48	8117929	7941214	NM_002689	POLA2	0.695138	1.920636e-16	9.983660e-12	2.079929e-13
49	8179112	8158446	NM_015354	NUP188	0.691976	2.981249e-16	1.549683e-11	3.162618e-13
50	8117929	8158446	NM_015354	NUP188	0.691976	2.981249e-16	1.549683e-11	3.099366e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation