[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3248	7943297	NM_014679	CEP57		centrosomal protein 57kDa

Fetching correlation data, please wait...
Getting list of correlations for id 3248.
Getting list of p-values for id 3248.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.138 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7943297	7938448	NM_017944	USP47	0.861060	5.084256e-32	8.809490e-28	8.809490e-28
2	7943297	7975068	NM_001123329	ZBTB1	0.859849	7.697565e-32	1.333757e-27	6.668785e-28
3	7943297	7989885	NM_001031723	DNAJB14	0.859096	9.945632e-32	1.723280e-27	5.744265e-28
4	7943297	8028186	NM_007145	ZNF146	0.858105	1.389572e-31	2.407711e-27	6.019278e-28
5	7943297	7917103	NM_015534	ZZZ3	0.856020	2.786921e-31	4.828898e-27	9.657795e-28
6	7943297	8088219	NM_001112736	C3orf63	0.852931	7.657006e-31	1.326729e-26	2.211216e-27
7	7943297	8128472	NM_006828	ASCC3	0.850909	1.465787e-30	2.539769e-26	3.628242e-27
8	7943297	8084128	NM_133462	TTC14	0.850107	1.891333e-30	3.277114e-26	4.096392e-27
9	7943297	8005501	NM_001135036	FAM18B2	0.849532	2.268917e-30	3.931353e-26	4.368170e-27
10	7943297	8155946	NM_033305	VPS13A	0.849086	2.610880e-30	4.523872e-26	4.523872e-27
11	7943297	8097480	NM_057175	NAA15	0.848926	2.745443e-30	4.757029e-26	4.324572e-27
12	7943297	8078270	NM_002948	RPL15	0.848546	3.092887e-30	5.359045e-26	4.465871e-27
13	7943297	7965022	NM_007043	KRR1	0.847181	4.734697e-30	8.203809e-26	6.310623e-27
14	7943297	8036813	NM_001005851	ZNF780B	0.842004	2.291977e-29	3.971309e-25	2.836650e-26
15	7943297	8140942	NM_001040057	FAM133B	0.839632	4.633198e-29	8.027943e-25	5.351962e-26
16	7943297	8156604	BC022957	C9orf102	0.836439	1.173895e-28	2.034008e-24	1.271255e-25
17	7943297	8046759	NM_018981	DNAJC10	0.836314	1.216598e-28	2.108000e-24	1.240000e-25
18	7943297	8028227	NM_152604	ZNF383	0.836216	1.251468e-28	2.168419e-24	1.204677e-25
19	7943297	7971967	NM_014953	DIS3	0.835996	1.333373e-28	2.310336e-24	1.215966e-25
20	7943297	8134122	NM_005751	AKAP9	0.834653	1.957099e-28	3.391066e-24	1.695533e-25
21	7943297	7947221	NM_018362	LIN7C	0.834516	2.035137e-28	3.526281e-24	1.679182e-25
22	7943297	7936567	NM_014904	RAB11FIP2	0.833748	2.530052e-28	4.383821e-24	1.992646e-25
23	7943297	8078110	NM_014296	CAPN7	0.831945	4.199886e-28	7.277143e-24	3.163975e-25
24	7943297	8082911	NM_006153	NCK1	0.831762	4.421103e-28	7.660445e-24	3.191852e-25
25	7943297	8107942	NM_005732	RAD50	0.830820	5.745876e-28	9.955879e-24	3.982352e-25
26	7943297	8036820	NM_001142577	ZNF780A	0.830003	7.203500e-28	1.248150e-23	4.800578e-25
27	7943297	8027416	NM_003796	C19orf2	0.829976	7.258126e-28	1.257616e-23	4.657835e-25
28	7943297	7951447	NM_152434	CWF19L2	0.828833	9.935895e-28	1.721593e-23	6.148545e-25
29	7943297	7930380	NM_016824	ADD3	0.828014	1.242828e-27	2.153448e-23	7.425683e-25
30	7943297	8113733	NM_153223	CEP120	0.827988	1.251696e-27	2.168814e-23	7.229380e-25
31	7943297	8022393	NM_002828	PTPN2	0.826961	1.654113e-27	2.866082e-23	9.245427e-25
32	7943297	7969228	NM_001004127	ALG11	0.826057	2.110895e-27	3.657548e-23	1.142984e-24
33	7943297	8045697	NM_018151	RIF1	0.825681	2.335392e-27	4.046533e-23	1.226222e-24
34	7943297	7929562	NM_014803	ZNF518A	0.825370	2.538487e-27	4.398436e-23	1.293658e-24
35	7943297	8113157	NM_014639	TTC37	0.825035	2.776484e-27	4.810813e-23	1.374518e-24
36	7943297	8133030	NM_002040	GABPA	0.824911	2.870038e-27	4.972915e-23	1.381365e-24
37	7943297	8070341	NM_033656	BRWD1	0.824584	3.131704e-27	5.426303e-23	1.466568e-24
38	7943297	7901418	NM_152265	BTF3L4	0.823964	3.693761e-27	6.400180e-23	1.684258e-24
39	7943297	7961964	NM_018164	C12orf11	0.823870	3.786423e-27	6.560735e-23	1.682240e-24
40	7943297	8105504	NM_152789	FAM133B	0.823848	3.808605e-27	6.599170e-23	1.649793e-24
41	7943297	8107164	NM_015216	PPIP5K2	0.822488	5.455876e-27	9.453396e-23	2.305706e-24
42	7943297	8018038	NM_018672	ABCA5	0.822334	5.680686e-27	9.842924e-23	2.343553e-24
43	7943297	8068062	NM_006447	USP16	0.821648	6.801396e-27	1.178478e-22	2.740646e-24
44	7943297	8020068	NM_015208	ANKRD12	0.821638	6.818054e-27	1.181364e-22	2.684919e-24
45	7943297	7986769	NM_130839	UBE3A	0.821413	7.232084e-27	1.253103e-22	2.784674e-24
46	7943297	8045619	NM_015630	EPC2	0.821276	7.494449e-27	1.298563e-22	2.822963e-24
47	7943297	8050658	NM_017552	ATAD2B	0.820995	8.064972e-27	1.397418e-22	2.973229e-24
48	7943297	7995583	NM_025134	CHD9	0.820943	8.175603e-27	1.416587e-22	2.951222e-24
49	7943297	8120992	NM_015021	ZNF292	0.820566	9.017807e-27	1.562515e-22	3.188807e-24
50	7943297	8063283	NM_001316	CSE1L	0.820219	9.868968e-27	1.709996e-22	3.419992e-24

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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