[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2440	8126486	NM_014780	CUL7		cullin 7

Fetching correlation data, please wait...
Getting list of correlations for id 2440.
Getting list of p-values for id 2440.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.126 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8126486	8035539	NM_001492	GDF1	0.729668	1.060626e-18	1.837746e-14	1.837746e-14
2	8126486	8024100	NM_138690	GRIN3B	0.726374	1.801764e-18	3.121917e-14	1.560959e-14
3	8126486	8082289	NM_152889	CHST13	0.726091	1.885179e-18	3.266450e-14	1.088817e-14
4	8126486	8120022	NM_001253	CDC5L	-0.715648	9.605866e-18	1.664408e-13	4.161021e-14
5	8126486	7992147	NM_021098	CACNA1H	0.715103	1.043760e-17	1.808523e-13	3.617047e-14
6	8126486	8044263	NM_006267	RANBP2	-0.712434	1.562839e-17	2.707932e-13	4.513219e-14
7	8126486	8019367	NM_002917	RFNG	0.712131	1.635629e-17	2.834054e-13	4.048649e-14
8	8126486	8021818	NM_001480	GALR1	0.710679	2.032577e-17	3.521845e-13	4.402307e-14
9	8126486	8045619	NM_015630	EPC2	-0.707030	3.489653e-17	6.046521e-13	6.718357e-14
10	8126486	8060505	NM_001110514	EBF4	0.706928	3.542442e-17	6.137990e-13	6.137990e-14
11	8126486	8153486	NM_001162914	LOC100130274	0.706863	3.576219e-17	6.196514e-13	5.633194e-14
12	8126486	8153876	NM_025251	ARHGAP39	0.706604	3.715275e-17	6.437457e-13	5.364548e-14
13	8126486	7937560	NM_002457	MUC2	0.703310	6.003280e-17	1.040188e-12	8.001448e-14
14	8126486	8137715	NM_182924	MICALL2	0.702639	6.614667e-17	1.146123e-12	8.186595e-14
15	8126486	7950032	NM_002007	FGF4	0.702390	6.856826e-17	1.188082e-12	7.920548e-14
16	8126486	7926283	NM_003675	PRPF18	-0.698604	1.178469e-16	2.041933e-12	1.276208e-13
17	8126486	8004763	NM_000180	GUCY2D	0.698555	1.186646e-16	2.056101e-12	1.209471e-13
18	8126486	8105463	NM_022913	GPBP1	-0.698318	1.227235e-16	2.126429e-12	1.181350e-13
19	8126486	8155942	NM_001013735	FOXB2	0.696553	1.574717e-16	2.728512e-12	1.436059e-13
20	8126486	8106784	NM_002890	RASA1	-0.695919	1.721656e-16	2.983114e-12	1.491557e-13
21	8126486	8010783	NM_018949	UTS2R	0.694595	2.072188e-16	3.590481e-12	1.709753e-13
22	8126486	8052024	NM_025133	FBXO11	-0.694257	2.172066e-16	3.763538e-12	1.710699e-13
23	8126486	8013112	NM_016084	RASD1	0.693916	2.277887e-16	3.946895e-12	1.716041e-13
24	8126486	7936882	NM_001146340	NKX1-2	0.693878	2.289951e-16	3.967799e-12	1.653250e-13
25	8126486	7932308	NM_001010908	C1QL3	0.693746	2.332365e-16	4.041289e-12	1.616516e-13
26	8126486	8076169	NM_014293	NPTXR	0.693714	2.342970e-16	4.059664e-12	1.561409e-13
27	8126486	8072941	NM_003614	GALR3	0.692340	2.834693e-16	4.911673e-12	1.819138e-13
28	8126486	7916592	NM_001085487	MYSM1	-0.692276	2.860004e-16	4.955530e-12	1.769832e-13
29	8126486	7976243	NM_017437	CPSF2	-0.692082	2.937990e-16	5.090655e-12	1.755398e-13
30	8126486	8148517	NM_001702	BAI1	0.691560	3.157248e-16	5.470563e-12	1.823521e-13
31	8126486	8060660	NM_052970	HSPA12B	0.691457	3.202661e-16	5.549251e-12	1.790081e-13
32	8126486	8109403	NR_024152	MFAP3	-0.690999	3.410982e-16	5.910208e-12	1.846940e-13
33	8126486	7923360	NM_003281	TNNI1	0.690914	3.451176e-16	5.979852e-12	1.812076e-13
34	8126486	7945445	BC039077	C11orf35	0.690581	3.612646e-16	6.259631e-12	1.841068e-13
35	8126486	8104253	NM_033120	NKD2	0.690239	3.786399e-16	6.560693e-12	1.874484e-13
36	8126486	7915991	NM_032110	DMRTA2	0.690125	3.846398e-16	6.664653e-12	1.851293e-13
37	8126486	8115606	NM_006425	SLU7	-0.689601	4.132349e-16	7.160121e-12	1.935168e-13
38	8126486	8052018	NM_022055	KCNK12	0.689520	4.178312e-16	7.239762e-12	1.905200e-13
39	8126486	7975113	NM_145165	CHURC1	-0.689464	4.210469e-16	7.295480e-12	1.870636e-13
40	8126486	7940790	BC056402	C11orf84	0.689386	4.255700e-16	7.373852e-12	1.843463e-13
41	8126486	7942674	NM_015516	TSKU	0.688060	5.098810e-16	8.834708e-12	2.154807e-13
42	8126486	8097600	NM_003601	SMARCA5	-0.686894	5.972751e-16	1.034899e-11	2.464044e-13
43	8126486	8049567	NM_005855	RAMP1	0.686873	5.990340e-16	1.037946e-11	2.413828e-13
44	8126486	8131087	NM_001080461	UNCX	0.686160	6.595946e-16	1.142879e-11	2.597453e-13
45	8126486	7947928	NM_031909	C1QTNF4	0.685936	6.797977e-16	1.177886e-11	2.617523e-13
46	8126486	8074108	NM_012324	MAPK8IP2	0.685585	7.127747e-16	1.235025e-11	2.684836e-13
47	8126486	8077204	NM_000040	APOC3	0.685539	7.171362e-16	1.242582e-11	2.643791e-13
48	8126486	8053022	NM_001965	EGR4	0.685376	7.330542e-16	1.270163e-11	2.646173e-13
49	8126486	8105353	NM_015360	SKIV2L2	-0.685248	7.458391e-16	1.292315e-11	2.637379e-13
50	8126486	8158671	NM_000050	ASS1	0.684964	7.748348e-16	1.342556e-11	2.685112e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation