[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
4257	7944035	NM_000040	APOC3		apolipoprotein C-III
5018	8077204	NM_000040	APOC3		apolipoprotein C-III

Fetching correlation data, please wait...
Getting list of correlations for id 4257.
Getting list of p-values for id 4257.
1 of 2 done.
Getting list of correlations for id 5018.
Getting list of p-values for id 5018.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.214 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8077204	7944035	NM_000040	APOC3	0.986380	1.445825e-82	5.010360e-78	5.010360e-78
2	7944035	8077204	NM_000040	APOC3	0.986380	1.445825e-82	5.010360e-78	2.505180e-78
3	7944035	7937560	NM_002457	MUC2	0.824055	3.605040e-27	1.249291e-22	4.164302e-23
4	8077204	7937560	NM_002457	MUC2	0.819666	1.138678e-26	3.945976e-22	9.864939e-23
5	7944035	8038299	NM_033142	CGB7	0.812881	6.345463e-26	2.198957e-21	4.397913e-22
6	7944035	7912031	NM_019089	HES2	0.811530	8.857784e-26	3.069577e-21	5.115961e-22
7	8077204	8125805	NM_000841	GRM4	0.808905	1.681331e-25	5.826485e-21	8.323550e-22
8	8077204	8150928	NM_003580	NSMAF	-0.806731	2.837512e-25	9.833113e-21	1.229139e-21
9	8077204	8038299	NM_033142	CGB7	0.806536	2.972408e-25	1.030058e-20	1.144509e-21
10	7944035	8125805	NM_000841	GRM4	0.806283	3.157517e-25	1.094206e-20	1.094206e-21
11	7944035	7990928	ENST00000342039		0.802687	7.379864e-25	2.557418e-20	2.324925e-21
12	7944035	7985459	ENST00000342039		0.802687	7.379864e-25	2.557418e-20	2.131182e-21
13	7944035	7985418	ENST00000342039		0.802687	7.379864e-25	2.557418e-20	1.967245e-21
14	8077204	8131056	NM_017781	CYP2W1	0.799304	1.614764e-24	5.595804e-20	3.997003e-21
15	7944035	8030181	NM_033378	CGB2	0.797941	2.203989e-24	7.637704e-20	5.091803e-21
16	8077204	7990928	ENST00000342039		0.797515	2.427837e-24	8.413427e-20	5.258392e-21
17	8077204	7985418	ENST00000342039		0.797515	2.427837e-24	8.413427e-20	4.949075e-21
18	8077204	7985459	ENST00000342039		0.797515	2.427837e-24	8.413427e-20	4.674126e-21
19	8077204	8030181	NM_033378	CGB2	0.797281	2.560246e-24	8.872277e-20	4.669619e-21
20	7944035	8005328	NM_016239	MYO15A	0.797264	2.570008e-24	8.906104e-20	4.453052e-21
21	8077204	7912031	NM_019089	HES2	0.795672	3.681137e-24	1.275661e-19	6.074578e-21
22	7944035	8150928	NM_003580	NSMAF	-0.793912	5.455324e-24	1.890488e-19	8.593128e-21
23	7944035	8131056	NM_017781	CYP2W1	0.792017	8.296404e-24	2.875036e-19	1.250016e-20
24	7944035	8076169	NM_014293	NPTXR	0.791956	8.408769e-24	2.913975e-19	1.214156e-20
25	8077204	8110382	NM_030567	PRR7	0.791548	9.196693e-24	3.187022e-19	1.274809e-20
26	8077204	7927367	NM_001040084	ANXA8	0.791049	1.026005e-23	3.555519e-19	1.367507e-20
27	7944035	7927367	NM_001040084	ANXA8	0.791009	1.034971e-23	3.586588e-19	1.328366e-20
28	8077204	7998015	NM_032451	SPIRE2	0.790718	1.103038e-23	3.822467e-19	1.365167e-20
29	8077204	8039362	NM_178837	C19orf51	0.789536	1.427031e-23	4.945234e-19	1.705253e-20
30	7944035	8046276	NM_001003845	SP5	0.789140	1.554952e-23	5.388532e-19	1.796177e-20
31	7944035	8006063	NM_152345	ANKRD13B	0.789057	1.583067e-23	5.485961e-19	1.769665e-20
32	7944035	7912004	NM_207370	GPR153	0.788870	1.648606e-23	5.713080e-19	1.785337e-20
33	7944035	8032312	NM_138813	ATP8B3	0.788659	1.725518e-23	5.979609e-19	1.812003e-20
34	7944035	8039362	NM_178837	C19orf51	0.788571	1.758632e-23	6.094363e-19	1.792460e-20
35	7944035	7998015	NM_032451	SPIRE2	0.788542	1.769610e-23	6.132407e-19	1.752116e-20
36	8077204	7927307	NM_001630	ANXA8L2	0.788497	1.787057e-23	6.192869e-19	1.720241e-20
37	8077204	8076169	NM_014293	NPTXR	0.786881	2.529447e-23	8.765546e-19	2.369066e-20
38	7944035	7952893	BC024764	IQSEC3	0.786767	2.591684e-23	8.981221e-19	2.363479e-20
39	7944035	8125568	NM_080680	COL11A2	0.786603	2.684357e-23	9.302372e-19	2.385224e-20
40	8077204	8005328	NM_016239	MYO15A	0.786139	2.963810e-23	1.027079e-18	2.567697e-20
41	8077204	7992845	NM_003456	ZNF205	0.786066	3.010478e-23	1.043251e-18	2.544514e-20
42	8077204	8126379	ENST00000341865		0.786037	3.029222e-23	1.049747e-18	2.499397e-20
43	7944035	7927307	NM_001630	ANXA8L2	0.785898	3.119927e-23	1.081179e-18	2.514371e-20
44	7944035	8156415	NM_006648	WNK2	0.785725	3.237335e-23	1.121866e-18	2.549696e-20
45	8077204	8006063	NM_152345	ANKRD13B	0.785239	3.589516e-23	1.243911e-18	2.764247e-20
46	7944035	7992845	NM_003456	ZNF205	0.784903	3.854379e-23	1.335697e-18	2.903688e-20
47	7944035	8110382	NM_030567	PRR7	0.783515	5.165494e-23	1.790050e-18	3.808618e-20
48	8077204	8032312	NM_138813	ATP8B3	0.783024	5.726443e-23	1.984442e-18	4.134253e-20
49	8077204	8046276	NM_001003845	SP5	0.782467	6.435384e-23	2.230118e-18	4.551261e-20
50	8077204	8019576	NM_033184	KRTAP2-4	0.781405	8.029792e-23	2.782644e-18	5.565288e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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