[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5609	8009040	NM_006039	MRC2		mannose receptor, C type 2

Fetching correlation data, please wait...
Getting list of correlations for id 5609.
Getting list of p-values for id 5609.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.119 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8009040	8029671	NM_177417	KLC3	0.793771	5.628147e-24	9.751890e-20	9.751890e-20
2	8009040	7897280	NM_001024598	HES3	0.753535	1.783429e-20	3.090147e-16	1.545074e-16
3	8009040	8158708	NM_021619	PRDM12	0.745666	7.211210e-20	1.249486e-15	4.164955e-16
4	8009040	8153704	NM_031309	SCRT1	0.743261	1.094007e-19	1.895585e-15	4.738964e-16
5	8009040	8006865	NM_032192	PPP1R1B	0.742008	1.356873e-19	2.351054e-15	4.702108e-16
6	8009040	8027040	NM_012109	TMEM59L	0.741880	1.386906e-19	2.403092e-15	4.005154e-16
7	8009040	8035249	NM_005234	NR2F6	0.741649	1.442936e-19	2.500175e-15	3.571679e-16
8	8009040	8007112	NM_001146041	KRTAP4-9	0.741486	1.483803e-19	2.570986e-15	3.213733e-16
9	8009040	7937228	NM_001012508	SPRN	0.737748	2.795623e-19	4.843976e-15	5.382195e-16
10	8009040	7991332	NM_018670	MESP1	0.733155	6.001431e-19	1.039868e-14	1.039868e-15
11	8009040	7997569	NM_139174	ADAD2	0.732421	6.770424e-19	1.173111e-14	1.066465e-15
12	8009040	7896779	NM_198317	KLHL17	0.732216	7.001896e-19	1.213218e-14	1.011015e-15
13	8009040	8104268	NM_001003841	SLC6A19	0.731263	8.182989e-19	1.417867e-14	1.090667e-15
14	8009040	8034578	NM_006563	KLF1	0.731084	8.425885e-19	1.459953e-14	1.042824e-15
15	8009040	8133339	NM_001077621	VPS37D	0.730903	8.678367e-19	1.503701e-14	1.002467e-15
16	8009040	8066214	NM_004613	TGM2	0.729841	1.031409e-18	1.787122e-14	1.116951e-15
17	8009040	8004545	NM_001678	ATP1B2	0.729401	1.107605e-18	1.919147e-14	1.128910e-15
18	8009040	8170662	NM_005629	SLC6A8	0.729385	1.110353e-18	1.923909e-14	1.068838e-15
19	8009040	7947928	NM_031909	C1QTNF4	0.727979	1.393081e-18	2.413791e-14	1.270416e-15
20	8009040	8076747	AK123383	LOC642648	0.727705	1.455949e-18	2.522723e-14	1.261361e-15
21	8009040	8019699	NM_033059	KRTAP4-11	0.727273	1.560439e-18	2.703772e-14	1.287511e-15
22	8009040	8044263	NM_006267	RANBP2	-0.726880	1.661949e-18	2.879659e-14	1.308936e-15
23	8009040	8019693	NM_148896	NPB	0.726582	1.742939e-18	3.019990e-14	1.313039e-15
24	8009040	8010696	NM_148896	NPB	0.726582	1.742939e-18	3.019990e-14	1.258329e-15
25	8009040	7945445	BC039077	C11orf35	0.725506	2.069259e-18	3.585406e-14	1.434162e-15
26	8009040	8141643	NM_001015072	UFSP1	0.725349	2.121721e-18	3.676307e-14	1.413964e-15
27	8009040	8029489	NM_005581	BCAM	0.725137	2.194343e-18	3.802138e-14	1.408199e-15
28	8009040	7938208	NM_014469	RBMXL2	0.724922	2.270372e-18	3.933874e-14	1.404955e-15
29	8009040	8024048	NM_002777	PRTN3	0.722328	3.418758e-18	5.923683e-14	2.042649e-15
30	8009040	8159808	NM_207305	FOXD4	0.721353	3.982729e-18	6.900874e-14	2.300291e-15
31	8009040	8116591	NM_001453	FOXC1	0.720621	4.464219e-18	7.735152e-14	2.495210e-15
32	8009040	7940377	NM_017870	TMEM132A	0.720279	4.708841e-18	8.159010e-14	2.549691e-15
33	8009040	8067743	NM_025224	ZBTB46	0.720030	4.894560e-18	8.480805e-14	2.569941e-15
34	8009040	7948511	NM_152718	VWCE	0.720028	4.895781e-18	8.482920e-14	2.494976e-15
35	8009040	7962703	NM_001844	COL2A1	0.719812	5.063262e-18	8.773114e-14	2.506604e-15
36	8009040	8059014	NM_017521	FEV	0.719438	5.365600e-18	9.296975e-14	2.582493e-15
37	8009040	8067585	NM_080606	BHLHE23	0.719244	5.528866e-18	9.579865e-14	2.589153e-15
38	8009040	8093826	NM_000683	ADRA2C	0.718582	6.124435e-18	1.061181e-13	2.792581e-15
39	8009040	8064370	NM_004609	TCF15	0.718287	6.410251e-18	1.110704e-13	2.847959e-15
40	8009040	7938090	NM_176875	CCKBR	0.717341	7.414460e-18	1.284704e-13	3.211759e-15
41	8009040	8103411	ENST00000362989		0.716838	8.008414e-18	1.387618e-13	3.384434e-15
42	8009040	8033825	NM_015719	COL5A3	0.715848	9.317524e-18	1.614447e-13	3.843922e-15
43	8009040	7908637	NM_005298	GPR25	0.715802	9.383475e-18	1.625875e-13	3.781104e-15
44	8009040	8131296	NR_015343	LOC389458	0.715605	9.669151e-18	1.675374e-13	3.807668e-15
45	8009040	8120880	NM_006670	TPBG	0.715536	9.772231e-18	1.693235e-13	3.762743e-15
46	8009040	7912004	NM_207370	GPR153	0.714808	1.091630e-17	1.891467e-13	4.111885e-15
47	8009040	8003478	NM_152339	SPATA2L	0.714233	1.191045e-17	2.063724e-13	4.390902e-15
48	8009040	8093792	NM_001528	HGFAC	0.712842	1.469605e-17	2.546385e-13	5.304969e-15
49	8009040	8158554	NM_016307	PRRX2	0.712584	1.527988e-17	2.647545e-13	5.403152e-15
50	8009040	7897006	NM_006983	MMP23B	0.711352	1.838169e-17	3.184995e-13	6.369991e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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