[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3914	8029489	NM_005581	BCAM		basal cell adhesion molecule (Lutheran blood group)

Fetching correlation data, please wait...
Getting list of correlations for id 3914.
Getting list of p-values for id 3914.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.140 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8029489	8019699	NM_033059	KRTAP4-11	0.784685	4.036445e-23	6.993949e-19	6.993949e-19
2	8029489	7977033	NM_030943	AMN	0.768174	1.147052e-21	1.987497e-17	9.937484e-18
3	8029489	8104268	NM_001003841	SLC6A19	0.762880	3.165199e-21	5.484340e-17	1.828113e-17
4	8029489	7897280	NM_001024598	HES3	0.758065	7.790174e-21	1.349803e-16	3.374509e-17
5	8029489	8138670	NM_031243	HNRNPA2B1	-0.757942	7.968696e-21	1.380736e-16	2.761472e-17
6	8029489	8156743	NM_004473	FOXE1	0.754625	1.463665e-20	2.536093e-16	4.226821e-17
7	8029489	7930482	NM_000681	ADRA2A	0.752827	2.026831e-20	3.511889e-16	5.016985e-17
8	8029489	8125234	NM_019105	TNXB	0.751357	2.639239e-20	4.573010e-16	5.716262e-17
9	8029489	8133704	NM_001110199	SRRM3	0.749856	3.449200e-20	5.976428e-16	6.640476e-17
10	8029489	8054092	NM_015348	TMEM131	-0.749385	3.750288e-20	6.498125e-16	6.498125e-17
11	8029489	8024995	NM_004558	NRTN	0.749029	3.994574e-20	6.921398e-16	6.292180e-17
12	8029489	8079021	NM_001904	CTNNB1	-0.748555	4.343649e-20	7.526241e-16	6.271867e-17
13	8029489	7991332	NM_018670	MESP1	0.747352	5.369138e-20	9.303105e-16	7.156235e-17
14	8029489	8098512	NM_021942	C4orf41	-0.745462	7.472582e-20	1.294774e-15	9.248388e-17
15	8029489	7966631	NM_022363	LHX5	0.744210	9.286052e-20	1.608994e-15	1.072663e-16
16	8029489	8071951	ENST00000330974		0.743430	1.062680e-19	1.841305e-15	1.150816e-16
17	8029489	7897890	NM_015378	VPS13D	-0.743032	1.138120e-19	1.972021e-15	1.160012e-16
18	8029489	8029671	NM_177417	KLC3	0.742197	1.313748e-19	2.276332e-15	1.264629e-16
19	8029489	8033956	NM_004230	S1PR2	0.741055	1.597027e-19	2.767169e-15	1.456405e-16
20	8029489	8138757	NM_018951	HOXA10	0.737053	3.141680e-19	5.443589e-15	2.721794e-16
21	8029489	8174642	ENST00000436902		0.736803	3.275706e-19	5.675815e-15	2.702769e-16
22	8029489	8032034	NM_001136263	C2CD4C	0.736697	3.334222e-19	5.777207e-15	2.626003e-16
23	8029489	8030721	NM_002975	CLEC11A	0.735869	3.828789e-19	6.634143e-15	2.884410e-16
24	8029489	7910638	ENST00000410639		0.733671	5.512512e-19	9.551530e-15	3.979804e-16
25	8029489	7898377	NM_014675	CROCC	0.732437	6.752797e-19	1.170057e-14	4.680229e-16
26	8029489	8050805	NM_001035256	POMC	0.731870	7.410383e-19	1.283997e-14	4.938451e-16
27	8029489	7983663	NM_005154	USP8	-0.731301	8.133164e-19	1.409233e-14	5.219383e-16
28	8029489	7935983	NM_005029	PITX3	0.730947	8.616199e-19	1.492929e-14	5.331889e-16
29	8029489	8132805	NM_198570	VWC2	0.730634	9.067330e-19	1.571096e-14	5.417574e-16
30	8029489	8179950	NM_030651	PRRT1	0.729637	1.066053e-18	1.847150e-14	6.157166e-16
31	8029489	8178754	NM_030651	PRRT1	0.729637	1.066053e-18	1.847150e-14	5.958548e-16
32	8029489	8100902	NM_032217	ANKRD17	-0.729403	1.107169e-18	1.918392e-14	5.994975e-16
33	8029489	7911376	NM_001142467	HES4	0.726605	1.736593e-18	3.008996e-14	9.118168e-16
34	8029489	8125321	NM_030651	PRRT1	0.725411	2.100817e-18	3.640086e-14	1.070613e-15
35	8029489	8009040	NM_006039	MRC2	0.725137	2.194343e-18	3.802138e-14	1.086325e-15
36	8029489	8062766	NM_002466	MYBL2	0.724952	2.259819e-18	3.915589e-14	1.087664e-15
37	8029489	7912004	NM_207370	GPR153	0.724912	2.274088e-18	3.940313e-14	1.064949e-15
38	8029489	8148772	NM_016458	C8orf30A	0.724339	2.490333e-18	4.314999e-14	1.135526e-15
39	8029489	7949015	NM_001144936	C11orf95	0.723911	2.664727e-18	4.617172e-14	1.183890e-15
40	8029489	7968260	NM_145657	GSX1	0.722496	3.330016e-18	5.769919e-14	1.442480e-15
41	8029489	8100714	NM_001031732	YTHDC1	-0.722176	3.501488e-18	6.067029e-14	1.479763e-15
42	8029489	8073214	NM_001024843	TNRC6B	-0.721980	3.610764e-18	6.256370e-14	1.489612e-15
43	8029489	7908637	NM_005298	GPR25	0.721585	3.840846e-18	6.655034e-14	1.547682e-15
44	8029489	8155661	NM_199135	FOXD4L3	0.721283	4.026514e-18	6.976740e-14	1.585623e-15
45	8029489	8165171	NM_019892	INPP5E	0.721270	4.034764e-18	6.991035e-14	1.553563e-15
46	8029489	8006562	NM_033315	RASL10B	0.720736	4.385516e-18	7.598784e-14	1.651909e-15
47	8029489	7914791	NM_005066	SFPQ	-0.720410	4.613544e-18	7.993887e-14	1.700827e-15
48	8029489	8150491	NM_001099412	MYST3	-0.720263	4.720646e-18	8.179464e-14	1.704055e-15
49	8029489	8033455	ENST00000327607		0.719954	4.952557e-18	8.581295e-14	1.751285e-15
50	8029489	7985310	NM_021214	FAM108C1	0.719879	5.010800e-18	8.682213e-14	1.736443e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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