[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
7409	8178754	NM_030651	PRRT1		proline-rich transmembrane protein 1
7410	8179950	NM_030651	PRRT1		proline-rich transmembrane protein 1
8675	8125321	NM_030651	PRRT1		proline-rich transmembrane protein 1

Fetching correlation data, please wait...
Getting list of correlations for id 7409.
Getting list of p-values for id 7409.
1 of 3 done.
Getting list of correlations for id 7410.
Getting list of p-values for id 7410.
2 of 3 done.
Getting list of correlations for id 8675.
Getting list of p-values for id 8675.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.315 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8178754	8179950	NM_030651	PRRT1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8179950	8178754	NM_030651	PRRT1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8178754	8125321	NM_030651	PRRT1	0.987092	9.292818e-84	4.830500e-79	1.610167e-79
4	8125321	8178754	NM_030651	PRRT1	0.987092	9.292818e-84	4.830500e-79	1.207625e-79
5	8179950	8125321	NM_030651	PRRT1	0.987092	9.292818e-84	4.830500e-79	9.660999e-80
6	8125321	8179950	NM_030651	PRRT1	0.987092	9.292818e-84	4.830500e-79	8.050833e-80
7	8125321	8093826	NM_000683	ADRA2C	0.793676	5.749049e-24	2.988413e-19	4.269162e-20
8	8125321	7992269	ENST00000301714		0.790612	1.128792e-23	5.867575e-19	7.334468e-20
9	8125321	8137330	ENST00000356058		0.785515	3.384542e-23	1.759319e-18	1.954798e-19
10	8125321	8133704	NM_001110199	SRRM3	0.779511	1.188305e-22	6.176927e-18	6.176927e-19
11	8179950	8093826	NM_000683	ADRA2C	0.779391	1.217938e-22	6.330966e-18	5.755423e-19
12	8178754	8093826	NM_000683	ADRA2C	0.779391	1.217938e-22	6.330966e-18	5.275805e-19
13	8125321	8014269	NM_139285	GAS2L2	0.779272	1.248279e-22	6.488680e-18	4.991292e-19
14	8125321	7925739	ENST00000403423		0.779267	1.249420e-22	6.494609e-18	4.639007e-19
15	8125321	8073449	NM_014460	CSDC2	0.779180	1.272050e-22	6.612241e-18	4.408160e-19
16	8178754	7992269	ENST00000301714		0.776470	2.211452e-22	1.149535e-17	7.184592e-19
17	8179950	7992269	ENST00000301714		0.776470	2.211452e-22	1.149535e-17	6.761969e-19
18	8125321	8036270	NM_152658	THAP8	0.774722	3.146418e-22	1.635540e-17	9.086331e-19
19	8125321	8039504	NM_001145176	SHISA7	0.774385	3.366854e-22	1.750124e-17	9.211181e-19
20	8125321	8006562	NM_033315	RASL10B	0.773499	4.019336e-22	2.089291e-17	1.044645e-18
21	8179950	8133704	NM_001110199	SRRM3	0.773081	4.369284e-22	2.271198e-17	1.081523e-18
22	8178754	8133704	NM_001110199	SRRM3	0.773081	4.369284e-22	2.271198e-17	1.032363e-18
23	8125321	8006865	NM_032192	PPP1R1B	0.771957	5.461100e-22	2.838734e-17	1.234232e-18
24	8125321	7949857	NM_181843	NUDT8	0.771148	6.408297e-22	3.331097e-17	1.387957e-18
25	8125321	8161426	BC119675	FAM27E3	0.770953	6.660084e-22	3.461978e-17	1.384791e-18
26	8125321	8161437	BC119675	FAM27E3	0.770953	6.660084e-22	3.461978e-17	1.331530e-18
27	8125321	8155569	BC119675	FAM27E3	0.770953	6.660084e-22	3.461978e-17	1.282214e-18
28	8125321	7936882	NM_001146340	NKX1-2	0.770012	8.012029e-22	4.164733e-17	1.487405e-18
29	8125321	8098740	NM_033178	DUX4	0.769445	8.952560e-22	4.653630e-17	1.604700e-18
30	8125321	8019693	NM_148896	NPB	0.769429	8.980632e-22	4.668223e-17	1.556074e-18
31	8125321	8010696	NM_148896	NPB	0.769429	8.980632e-22	4.668223e-17	1.505878e-18
32	8179950	7925739	ENST00000403423		0.769271	9.262821e-22	4.814907e-17	1.504658e-18
33	8178754	7925739	ENST00000403423		0.769271	9.262821e-22	4.814907e-17	1.459063e-18
34	8179950	7927560	NM_001005751	FAM21A	-0.769170	9.446924e-22	4.910606e-17	1.444296e-18
35	8178754	7927560	NM_001005751	FAM21A	-0.769170	9.446924e-22	4.910606e-17	1.403030e-18
36	8125321	8125234	NM_019105	TNXB	0.768901	9.957284e-22	5.175896e-17	1.437749e-18
37	8125321	8143941	NM_198285	WDR86	0.768808	1.013910e-21	5.270404e-17	1.424434e-18
38	8178754	8137330	ENST00000356058		0.767568	1.290041e-21	6.705762e-17	1.764674e-18
39	8179950	8137330	ENST00000356058		0.767568	1.290041e-21	6.705762e-17	1.719426e-18
40	8125321	7898431	NM_016233	PADI3	0.766636	1.544793e-21	8.029991e-17	2.007498e-18
41	8125321	8024605	NM_021938	CELF5	0.765166	2.048699e-21	1.064934e-16	2.597400e-18
42	8125321	8052018	NM_022055	KCNK12	0.764802	2.196576e-21	1.141802e-16	2.718577e-18
43	8125321	7927560	NM_001005751	FAM21A	-0.764661	2.256278e-21	1.172836e-16	2.727525e-18
44	8178754	8039504	NM_001145176	SHISA7	0.764491	2.330873e-21	1.211611e-16	2.753661e-18
45	8179950	8039504	NM_001145176	SHISA7	0.764491	2.330873e-21	1.211611e-16	2.692469e-18
46	8125321	8098732	NM_033178	DUX4	0.764189	2.468906e-21	1.283362e-16	2.789917e-18
47	8178754	8024605	NM_021938	CELF5	0.764126	2.498488e-21	1.298739e-16	2.763275e-18
48	8179950	8024605	NM_021938	CELF5	0.764126	2.498488e-21	1.298739e-16	2.705707e-18
49	8179950	8036270	NM_152658	THAP8	0.764115	2.503718e-21	1.301458e-16	2.656036e-18
50	8178754	8036270	NM_152658	THAP8	0.764115	2.503718e-21	1.301458e-16	2.602916e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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