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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 13171.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
13171 8161426 BC119675 FAM27E3 link to infopage family with sequence similarity 27, member E3

Fetching correlation data, please wait...
Getting list of correlations for id 13171.
Getting list of p-values for id 13171.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.099 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8161426 8161437 BC119675 FAM27E3 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 8161426 8155569 BC119675 FAM27E3 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
3 8161426 7928291 NM_004273 CHST3 link to infopage 0.830359 6.529006e-28 1.131281e-23 3.770936e-24
4 8161426 8131087 NM_001080461 UNCX link to infopage 0.830159 6.898737e-28 1.195344e-23 2.988360e-24
5 8161426 7911435 NM_001014980 FAM132A link to infopage 0.828932 9.669743e-28 1.675476e-23 3.350953e-24
6 8161426 8060609 ENST00000410721 link to infopage 0.825741 2.298330e-27 3.982317e-23 6.637195e-24
7 8161426 8056041 link to infopage 0.821079 7.889875e-27 1.367079e-22 1.952969e-23
8 8161426 7936882 NM_001146340 NKX1-2 link to infopage 0.821074 7.900157e-27 1.368860e-22 1.711075e-23
9 8161426 8039605 NM_001005850 ZNF835 link to infopage 0.817282 2.099342e-26 3.637529e-22 4.041699e-23
10 8161426 7930956 NM_007190 SEC23IP link to infopage -0.817181 2.153793e-26 3.731877e-22 3.731877e-23
11 8161426 8046276 NM_001003845 SP5 link to infopage 0.817056 2.223613e-26 3.852855e-22 3.502595e-23
12 8161426 8008201 NM_002507 NGFR link to infopage 0.815977 2.922763e-26 5.064271e-22 4.220226e-23
13 8161426 8005328 NM_016239 MYO15A link to infopage 0.812006 7.877506e-26 1.364935e-21 1.049950e-22
14 8161426 8098740 NM_033178 DUX4 link to infopage 0.811951 7.985488e-26 1.383646e-21 9.883182e-23
15 8161426 8014269 NM_139285 GAS2L2 link to infopage 0.811490 8.945902e-26 1.550056e-21 1.033371e-22
16 8161426 8038299 NM_033142 CGB7 link to infopage 0.811361 9.234509e-26 1.600063e-21 1.000040e-22
17 8161426 8107897 NM_003687 PDLIM4 link to infopage 0.810814 1.056193e-25 1.830065e-21 1.076509e-22
18 8161426 8074131 NM_001080420 SHANK3 link to infopage 0.809887 1.324543e-25 2.295035e-21 1.275019e-22
19 8161426 8098732 NM_033178 DUX4 link to infopage 0.809008 1.640039e-25 2.841695e-21 1.495629e-22
20 8161426 8039504 NM_001145176 SHISA7 link to infopage 0.808729 1.754379e-25 3.039813e-21 1.519907e-22
21 8161426 8132070 NM_002047 GARS link to infopage -0.807481 2.370516e-25 4.107393e-21 1.955902e-22
22 8161426 8048551 NM_005876 SPEG link to infopage 0.807183 2.546494e-25 4.412310e-21 2.005596e-22
23 8161426 7952243 NM_015645 C1QTNF5 link to infopage 0.805639 3.681314e-25 6.378613e-21 2.773310e-22
24 8161426 8052018 NM_022055 KCNK12 link to infopage 0.804983 4.300391e-25 7.451288e-21 3.104703e-22
25 8161426 8096556 NM_015143 METAP1 link to infopage -0.804899 4.387102e-25 7.601532e-21 3.040613e-22
26 8161426 8100902 NM_032217 ANKRD17 link to infopage -0.804797 4.494060e-25 7.786858e-21 2.994945e-22
27 8161426 8148517 NM_001702 BAI1 link to infopage 0.804508 4.812519e-25 8.338651e-21 3.088389e-22
28 8161426 8093826 NM_000683 ADRA2C link to infopage 0.804069 5.337111e-25 9.247612e-21 3.302719e-22
29 8161426 7992758 NM_172229 KREMEN2 link to infopage 0.802719 7.325688e-25 1.269322e-20 4.376972e-22
30 8161426 8151125 ENST00000340798 link to infopage 0.800686 1.174873e-24 2.035703e-20 6.785675e-22
31 8161426 7935983 NM_005029 PITX3 link to infopage 0.800282 1.289658e-24 2.234590e-20 7.208355e-22
32 8161426 7947363 NM_024424 WT1 link to infopage 0.800234 1.303974e-24 2.259396e-20 7.060611e-22
33 8161426 8121209 NM_005604 POU3F2 link to infopage 0.799482 1.549943e-24 2.685586e-20 8.138140e-22
34 8161426 8019693 NM_148896 NPB link to infopage 0.799229 1.642534e-24 2.846019e-20 8.370643e-22
35 8161426 8010696 NM_148896 NPB link to infopage 0.799229 1.642534e-24 2.846019e-20 8.131481e-22
36 8161426 8116579 NM_033260 FOXQ1 link to infopage 0.798751 1.832472e-24 3.175125e-20 8.819791e-22
37 8161426 7992460 NM_001099456 NPW link to infopage 0.798671 1.866218e-24 3.233596e-20 8.739448e-22
38 8161426 8036270 NM_152658 THAP8 link to infopage 0.797084 2.677134e-24 4.638670e-20 1.220703e-21
39 8161426 7896985 NM_080875 MIB2 link to infopage 0.796825 2.838568e-24 4.918387e-20 1.261125e-21
40 8161426 7967420 NM_018183 SBNO1 link to infopage -0.796490 3.061782e-24 5.305150e-20 1.326288e-21
41 8161426 7925446 link to infopage 0.795332 3.973033e-24 6.884074e-20 1.679042e-21
42 8161426 8060604 NM_000915 OXT link to infopage 0.795096 4.188063e-24 7.256657e-20 1.727776e-21
43 8161426 7929840 NM_003987 PAX2 link to infopage 0.794852 4.423376e-24 7.664384e-20 1.782415e-21
44 8161426 8067798 NM_018419 SOX18 link to infopage 0.793949 5.409939e-24 9.373801e-20 2.130409e-21
45 8161426 7992845 NM_003456 ZNF205 link to infopage 0.793399 6.113086e-24 1.059214e-19 2.353810e-21
46 8161426 7994052 NM_006043 HS3ST2 link to infopage 0.793308 6.238171e-24 1.080888e-19 2.349756e-21
47 8161426 7998724 NM_020764 CASKIN1 link to infopage 0.793257 6.309083e-24 1.093175e-19 2.325904e-21
48 8161426 8001449 NM_024336 IRX3 link to infopage 0.793242 6.329856e-24 1.096774e-19 2.284946e-21
49 8161426 8031084 NM_031895 CACNG8 link to infopage 0.792693 7.147059e-24 1.238371e-19 2.527288e-21
50 8161426 8168733 ENST00000427866 link to infopage 0.792578 7.330077e-24 1.270082e-19 2.540165e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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