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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 6 variables:
id Label1 AccNum GeneSym Info Gene Name
3734 8161446 BC032035 FAM27E3 link to infopage family with sequence similarity 27, member E3
3735 8161499 BC032035 FAM27E3 link to infopage family with sequence similarity 27, member E3
4421 8155514 BC032035 FAM27E3 link to infopage family with sequence similarity 27, member E3
13170 8155569 BC119675 FAM27E3 link to infopage family with sequence similarity 27, member E3
13171 8161426 BC119675 FAM27E3 link to infopage family with sequence similarity 27, member E3
13172 8161437 BC119675 FAM27E3 link to infopage family with sequence similarity 27, member E3

Fetching correlation data, please wait...
Getting list of correlations for id 3734.
Getting list of p-values for id 3734.
1 of 6 done.
Getting list of correlations for id 3735.
Getting list of p-values for id 3735.
2 of 6 done.
Getting list of correlations for id 4421.
Getting list of p-values for id 4421.
3 of 6 done.
Getting list of correlations for id 13170.
Getting list of p-values for id 13170.
4 of 6 done.
Getting list of correlations for id 13171.
Getting list of p-values for id 13171.
5 of 6 done.
Getting list of correlations for id 13172.
Getting list of p-values for id 13172.
6 of 6 done.
Calculating corrections for multiple testing (n=103962), please wait...
Done; whole program took 0.680 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8161437 8155569 BC119675 FAM27E3 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 8161426 8155569 BC119675 FAM27E3 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
3 8155569 8161437 BC119675 FAM27E3 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
4 8161426 8161437 BC119675 FAM27E3 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
5 8155569 8161426 BC119675 FAM27E3 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
6 8161437 8161426 BC119675 FAM27E3 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
7 8161499 8155514 BC032035 FAM27E3 link to infopage 0.980371 1.862627e-74 1.936424e-69 2.766320e-70
8 8155514 8161499 BC032035 FAM27E3 link to infopage 0.980371 1.862627e-74 1.936424e-69 2.420530e-70
9 8161446 8155514 BC032035 FAM27E3 link to infopage 0.978084 5.126408e-72 5.329517e-67 5.921685e-68
10 8155514 8161446 BC032035 FAM27E3 link to infopage 0.978084 5.126408e-72 5.329517e-67 5.329517e-68
11 8161446 8161499 BC032035 FAM27E3 link to infopage 0.972061 1.187932e-66 1.234998e-61 1.122725e-62
12 8161499 8161446 BC032035 FAM27E3 link to infopage 0.972061 1.187932e-66 1.234998e-61 1.029165e-62
13 8161426 7928291 NM_004273 CHST3 link to infopage 0.830359 6.529006e-28 6.787685e-23 5.221296e-24
14 8155569 7928291 NM_004273 CHST3 link to infopage 0.830359 6.529006e-28 6.787685e-23 4.848347e-24
15 8161437 7928291 NM_004273 CHST3 link to infopage 0.830359 6.529006e-28 6.787685e-23 4.525123e-24
16 8155569 8131087 NM_001080461 UNCX link to infopage 0.830159 6.898737e-28 7.172065e-23 4.482541e-24
17 8161437 8131087 NM_001080461 UNCX link to infopage 0.830159 6.898737e-28 7.172065e-23 4.218862e-24
18 8161426 8131087 NM_001080461 UNCX link to infopage 0.830159 6.898737e-28 7.172065e-23 3.984481e-24
19 8161437 7911435 NM_001014980 FAM132A link to infopage 0.828932 9.669743e-28 1.005286e-22 5.290978e-24
20 8155569 7911435 NM_001014980 FAM132A link to infopage 0.828932 9.669743e-28 1.005286e-22 5.026429e-24
21 8161426 7911435 NM_001014980 FAM132A link to infopage 0.828932 9.669743e-28 1.005286e-22 4.787075e-24
22 8161437 8060609 ENST00000410721 link to infopage 0.825741 2.298330e-27 2.389390e-22 1.086086e-23
23 8155569 8060609 ENST00000410721 link to infopage 0.825741 2.298330e-27 2.389390e-22 1.038865e-23
24 8161426 8060609 ENST00000410721 link to infopage 0.825741 2.298330e-27 2.389390e-22 9.955792e-24
25 8161437 8056041 link to infopage 0.821079 7.889875e-27 8.202472e-22 3.280989e-23
26 8155569 8056041 link to infopage 0.821079 7.889875e-27 8.202472e-22 3.154797e-23
27 8161426 8056041 link to infopage 0.821079 7.889875e-27 8.202472e-22 3.037952e-23
28 8161426 7936882 NM_001146340 NKX1-2 link to infopage 0.821074 7.900157e-27 8.213161e-22 2.933272e-23
29 8161437 7936882 NM_001146340 NKX1-2 link to infopage 0.821074 7.900157e-27 8.213161e-22 2.832124e-23
30 8155569 7936882 NM_001146340 NKX1-2 link to infopage 0.821074 7.900157e-27 8.213161e-22 2.737720e-23
31 8155569 8039605 NM_001005850 ZNF835 link to infopage 0.817282 2.099342e-26 2.182518e-21 7.040379e-23
32 8161426 8039605 NM_001005850 ZNF835 link to infopage 0.817282 2.099342e-26 2.182518e-21 6.820368e-23
33 8161437 8039605 NM_001005850 ZNF835 link to infopage 0.817282 2.099342e-26 2.182518e-21 6.613690e-23
34 8161426 7930956 NM_007190 SEC23IP link to infopage -0.817181 2.153793e-26 2.239126e-21 6.585666e-23
35 8161437 7930956 NM_007190 SEC23IP link to infopage -0.817181 2.153793e-26 2.239126e-21 6.397504e-23
36 8155569 7930956 NM_007190 SEC23IP link to infopage -0.817181 2.153793e-26 2.239126e-21 6.219796e-23
37 8161426 8046276 NM_001003845 SP5 link to infopage 0.817056 2.223613e-26 2.311713e-21 6.247873e-23
38 8161437 8046276 NM_001003845 SP5 link to infopage 0.817056 2.223613e-26 2.311713e-21 6.083455e-23
39 8155569 8046276 NM_001003845 SP5 link to infopage 0.817056 2.223613e-26 2.311713e-21 5.927469e-23
40 8155569 8008201 NM_002507 NGFR link to infopage 0.815977 2.922763e-26 3.038563e-21 7.596406e-23
41 8161437 8008201 NM_002507 NGFR link to infopage 0.815977 2.922763e-26 3.038563e-21 7.411128e-23
42 8161426 8008201 NM_002507 NGFR link to infopage 0.815977 2.922763e-26 3.038563e-21 7.234673e-23
43 8161426 8005328 NM_016239 MYO15A link to infopage 0.812006 7.877506e-26 8.189613e-21 1.904561e-22
44 8155569 8005328 NM_016239 MYO15A link to infopage 0.812006 7.877506e-26 8.189613e-21 1.861276e-22
45 8161437 8005328 NM_016239 MYO15A link to infopage 0.812006 7.877506e-26 8.189613e-21 1.819914e-22
46 8155569 8098740 NM_033178 DUX4 link to infopage 0.811951 7.985488e-26 8.301873e-21 1.804755e-22
47 8161437 8098740 NM_033178 DUX4 link to infopage 0.811951 7.985488e-26 8.301873e-21 1.766356e-22
48 8161426 8098740 NM_033178 DUX4 link to infopage 0.811951 7.985488e-26 8.301873e-21 1.729557e-22
49 8161426 8014269 NM_139285 GAS2L2 link to infopage 0.811490 8.945902e-26 9.300338e-21 1.898028e-22
50 8155569 8014269 NM_139285 GAS2L2 link to infopage 0.811490 8.945902e-26 9.300338e-21 1.860068e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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