[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5602	7980115	NM_005050	ABCD4		ATP-binding cassette, sub-family D (ALD), member 4

Fetching correlation data, please wait...
Getting list of correlations for id 5602.
Getting list of p-values for id 5602.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.123 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7980115	8052680	NM_004161	RAB1A	-0.659741	1.950511e-14	3.379651e-10	3.379651e-10
2	7980115	8113469	NM_014819	PJA2	-0.648696	7.282868e-14	1.261902e-9	6.309512e-10
3	7980115	8048980	NM_016289	CAB39	-0.643236	1.369578e-13	2.373068e-9	7.910228e-10
4	7980115	7989323	NM_004330	BNIP2	-0.640415	1.888599e-13	3.272375e-9	8.180938e-10
5	7980115	8113358	NM_005668	ST8SIA4	-0.628368	7.181555e-13	1.244348e-8	2.488696e-9
6	7980115	7902166	NM_020948	MIER1	-0.619715	1.809566e-12	3.135436e-8	5.225726e-9
7	7980115	8104944	NM_015384	NIPBL	-0.618955	1.959918e-12	3.395951e-8	4.851358e-9
8	7980115	8169750	NM_001042750	STAG2	-0.617051	2.391696e-12	4.144091e-8	5.180114e-9
9	7980115	8121588	NM_013352	DSE	-0.616904	2.428388e-12	4.207668e-8	4.675187e-9
10	7980115	7989037	NM_004748	CCPG1	-0.616494	2.534406e-12	4.391365e-8	4.391365e-9
11	7980115	7917240	NM_004388	CTBS	-0.616421	2.553637e-12	4.424687e-8	4.022443e-9
12	7980115	7965723	NM_015054	UHRF1BP1L	-0.614417	3.142841e-12	5.445601e-8	4.538001e-9
13	7980115	8174779	NM_013995	LAMP2	-0.613361	3.503994e-12	6.071370e-8	4.670285e-9
14	7980115	8052024	NM_025133	FBXO11	-0.612909	3.670400e-12	6.359701e-8	4.542644e-9
15	7980115	8006123	NM_001304	CPD	-0.611686	4.160292e-12	7.208537e-8	4.805692e-9
16	7980115	8046003	NM_012198	GCA	-0.611243	4.353031e-12	7.542497e-8	4.714061e-9
17	7980115	7903703	NM_006496	GNAI3	-0.608965	5.487719e-12	9.508571e-8	5.593277e-9
18	7980115	8148208	NM_144963	FAM91A1	-0.607810	6.166823e-12	1.068525e-7	5.936252e-9
19	7980115	8162833	NM_015051	ERP44	-0.606401	7.105727e-12	1.231209e-7	6.480049e-9
20	7980115	8084219	NM_017644	KLHL24	-0.606281	7.192155e-12	1.246185e-7	6.230924e-9
21	7980115	8106602	NM_014733	ZFYVE16	-0.604468	8.621456e-12	1.493840e-7	7.113522e-9
22	7980115	8105463	NM_022913	GPBP1	-0.604052	8.986650e-12	1.557117e-7	7.077804e-9
23	7980115	7902771	NM_016009	SH3GLB1	-0.604010	9.023547e-12	1.563510e-7	6.797869e-9
24	7980115	7930276	NM_014720	SLK	-0.603439	9.550578e-12	1.654829e-7	6.895119e-9
25	7980115	8121489	NM_001634	AMD1	-0.603112	9.866308e-12	1.709535e-7	6.838141e-9
26	7980115	8105191	NM_024615	PARP8	-0.601909	1.111408e-11	1.925737e-7	7.406679e-9
27	7980115	8166876	NM_001356	DDX3X	-0.601669	1.138055e-11	1.971909e-7	7.303365e-9
28	7980115	8135392	NM_012257	HBP1	-0.601546	1.152001e-11	1.996071e-7	7.128826e-9
29	7980115	8151711	NM_002485	NBN	-0.600939	1.223045e-11	2.119171e-7	7.307485e-9
30	7980115	8061324	NM_012255	XRN2	-0.600196	1.315723e-11	2.279754e-7	7.599180e-9
31	7980115	8062603	NM_003286	TOP1	-0.599656	1.387301e-11	2.403777e-7	7.754120e-9
32	7980115	7965123	NM_001143885	PPP1R12A	-0.599390	1.423887e-11	2.467168e-7	7.709901e-9
33	7980115	7969796	NM_004800	TM9SF2	-0.597586	1.698137e-11	2.942362e-7	8.916249e-9
34	7980115	8147724	NM_001695	ATP6V1C1	-0.597468	1.717851e-11	2.976520e-7	8.754472e-9
35	7980115	8162147	NM_024617	ZCCHC6	-0.597408	1.727869e-11	2.993878e-7	8.553938e-9
36	7980115	7922646	NM_022347	TOR1AIP2	-0.597132	1.774789e-11	3.075177e-7	8.542159e-9
37	7980115	8109403	NR_024152	MFAP3	-0.596991	1.799300e-11	3.117648e-7	8.426075e-9
38	7980115	8147172	NM_003909	CPNE3	-0.596517	1.883990e-11	3.264389e-7	8.590497e-9
39	7980115	7938592	NM_032228	FAR1	-0.596053	1.970650e-11	3.414545e-7	8.755243e-9
40	7980115	7922504	NM_022457	RFWD2	-0.594662	2.254105e-11	3.905688e-7	9.764221e-9
41	7980115	8120441	NM_015153	PHF3	-0.593542	2.510500e-11	4.349943e-7	1.060962e-8
42	7980115	7935692	NM_001100626	ERLIN1	-0.593428	2.538101e-11	4.397767e-7	1.047087e-8
43	7980115	8160718	NR_023917	PTENP1	-0.593420	2.539837e-11	4.400776e-7	1.023436e-8
44	7980115	8133809	NM_198467	RSBN1L	-0.593276	2.575189e-11	4.462030e-7	1.014098e-8
45	7980115	8092933	NM_012287	ACAP2	-0.592954	2.655917e-11	4.601907e-7	1.022646e-8
46	7980115	7938629	NM_000922	PDE3B	-0.592736	2.712101e-11	4.699258e-7	1.021578e-8
47	7980115	8045514	NM_001001664	SPOPL	-0.592453	2.786503e-11	4.828174e-7	1.027271e-8
48	7980115	7930454	NM_145341	PDCD4	-0.590020	3.513122e-11	6.087187e-7	1.268164e-8
49	7980115	8105681	NM_018695	ERBB2IP	-0.589981	3.525967e-11	6.109444e-7	1.246825e-8
50	7980115	7995448	NM_153261	TMEM188	-0.589775	3.595704e-11	6.230277e-7	1.246055e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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