[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4808	8065738	NM_000687	AHCY		adenosylhomocysteinase

Fetching correlation data, please wait...
Getting list of correlations for id 4808.
Getting list of p-values for id 4808.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.108 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8065738	8070811	NM_006936	SUMO3	0.491142	1.040057e-7	1.802107e-3	1.802107e-3
2	8065738	8038382	NM_017916	PIH1D1	0.482278	1.893607e-7	3.281052e-3	1.640526e-3
3	8065738	8080198	NM_144641	PPM1M	0.476542	2.765912e-7	4.792496e-3	1.597499e-3
4	8065738	8135856	NM_001662	ARF5	0.473202	3.437752e-7	5.956593e-3	1.489148e-3
5	8065738	7911730	NM_018216	PANK4	0.471989	3.718146e-7	6.442431e-3	1.288486e-3
6	8065738	8137680	NM_006869	ADAP1	0.461027	7.450067e-7	1.290873e-2	2.151455e-3
7	8065738	8007197	NM_017595	NKIRAS2	0.460965	7.478824e-7	1.295856e-2	1.851223e-3
8	8065738	8087100	NM_003365	UQCRC1	0.455029	1.078759e-6	1.869165e-2	2.336456e-3
9	8065738	8085206	NM_003656	CAMK1	0.454575	1.109077e-6	1.921698e-2	2.135220e-3
10	8065738	8119034	NM_015695	BRPF3	0.449162	1.539016e-6	2.666653e-2	2.666653e-3
11	8065738	8001924	NR_024525	FAM96B	0.443592	2.143484e-6	3.714014e-2	3.376377e-3
12	8065738	8016628	NM_032595	PPP1R9B	0.440212	2.613298e-6	4.528061e-2	3.773384e-3
13	8065738	7949454	NM_002419	MAP3K11	0.439066	2.793633e-6	4.840528e-2	3.723483e-3
14	8065738	8067279	NM_001336	CTSZ	0.438350	2.912147e-6	5.045878e-2	3.604199e-3
15	8065738	8006409	NM_003885	CDK5R1	0.437601	3.041329e-6	5.269711e-2	3.513140e-3
16	8065738	8042859	NM_031288	INO80B	0.434548	3.625463e-6	6.281839e-2	3.926150e-3
17	8065738	7996571	NM_024519	FAM65A	0.434322	3.672683e-6	6.363657e-2	3.743328e-3
18	8065738	8036004	NM_004364	CEBPA	0.429485	4.834173e-6	8.376172e-2	4.653429e-3
19	8065738	7898227	NM_015164	PLEKHM2	0.429407	4.855551e-6	8.413214e-2	4.428007e-3
20	8065738	8026806	NM_024656	GLT25D1	0.428799	5.024487e-6	8.705928e-2	4.352964e-3
21	8065738	8148728	NM_001916	CYC1	0.428087	5.229514e-6	9.061180e-2	4.314847e-3
22	8065738	8141526	NM_030935	TSC22D4	0.424843	6.267938e-6	1.086046e-1	4.936571e-3
23	8065738	8076225	NM_194326	RPS19BP1	0.423292	6.830356e-6	1.183496e-1	5.145634e-3
24	8065738	8158725	NM_005157	ABL1	0.421984	7.341490e-6	1.272060e-1	5.300250e-3
25	8065738	8074030	NM_014678	PPP6R2	0.421867	7.388890e-6	1.280273e-1	5.121092e-3
26	8065738	8079993	NM_007022	CYB561D2	0.419539	8.394500e-6	1.454515e-1	5.594288e-3
27	8065738	8136602	NM_004546	NDUFB2	0.418431	8.917206e-6	1.545084e-1	5.722534e-3
28	8065738	8003171	NM_021149	COTL1	0.417809	9.223837e-6	1.598214e-1	5.707908e-3
29	8065738	8141180	NM_015395	TECPR1	0.417250	9.507762e-6	1.647410e-1	5.680724e-3
30	8065738	8153411	NM_015117	ZC3H3	0.417147	9.561305e-6	1.656687e-1	5.522291e-3
31	8065738	8072876	NM_002305	LGALS1	0.415487	1.045852e-5	1.812149e-1	5.845640e-3
32	8065738	8004057	NM_006612	KIF1C	0.413874	1.140667e-5	1.976433e-1	6.176354e-3
33	8065738	8061247	NM_018993	RIN2	0.410354	1.376190e-5	2.384525e-1	7.225833e-3
34	8065738	8043621	NM_212481	ARID5A	0.410190	1.388200e-5	2.405334e-1	7.074511e-3
35	8065738	8000603	NM_003321	TUFM	0.409762	1.420021e-5	2.460470e-1	7.029914e-3
36	8065738	7897648	NM_004565	PEX14	0.408494	1.518430e-5	2.630983e-1	7.308287e-3
37	8065738	8031536	NM_007279	U2AF2	0.405163	1.808252e-5	3.133158e-1	8.467994e-3
38	8065738	7991989	NM_138769	RHOT2	0.403703	1.950956e-5	3.380421e-1	8.895844e-3
39	8065738	7949518	NM_198897	FIBP	0.403427	1.979084e-5	3.429159e-1	8.792715e-3
40	8065738	8037642	NM_177542	SNRPD2	0.403033	2.019952e-5	3.499970e-1	8.749926e-3
41	8065738	7941900	NM_003952	RPS6KB2	0.402886	2.035351e-5	3.526653e-1	8.601594e-3
42	8065738	8104298	NM_004553	NDUFS6	0.401343	2.204229e-5	3.819267e-1	9.093493e-3
43	8065738	8087283	NM_005051	QARS	0.400829	2.263428e-5	3.921842e-1	9.120563e-3
44	8065738	7898161	NM_024329	EFHD2	0.397415	2.695324e-5	4.670187e-1	1.061406e-2
45	8065738	8013633	NM_054035	UNC119	0.397390	2.698790e-5	4.676193e-1	1.039154e-2
46	8065738	8131143	NM_001040167	LFNG	0.396733	2.790433e-5	4.834983e-1	1.051083e-2
47	8065738	7920401	NM_014437	SLC39A1	0.395184	3.018161e-5	5.229568e-1	1.112674e-2
48	8065738	8069057	NR_024108	PFKL	0.395104	3.030287e-5	5.250578e-1	1.093870e-2
49	8065738	8110392	NM_017510	TMED9	0.394414	3.137688e-5	5.436671e-1	1.109525e-2
50	8065738	8053417	NM_001747	CAPG	0.393156	3.342594e-5	5.791713e-1	1.158343e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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