[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
10683	8118655	NM_003782	B3GALT4		UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4
10684	8178264	NM_003782	B3GALT4		UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4
10685	8179555	NM_003782	B3GALT4		UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4

Fetching correlation data, please wait...
Getting list of correlations for id 10683.
Getting list of p-values for id 10683.
1 of 3 done.
Getting list of correlations for id 10684.
Getting list of p-values for id 10684.
2 of 3 done.
Getting list of correlations for id 10685.
Getting list of p-values for id 10685.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.207 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8179555	8178264	NM_003782	B3GALT4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8178264	8118655	NM_003782	B3GALT4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8179555	8118655	NM_003782	B3GALT4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	8178264	8179555	NM_003782	B3GALT4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	8118655	8178264	NM_003782	B3GALT4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	8118655	8179555	NM_003782	B3GALT4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	8118655	7904869	NM_001130111	FAM108A1	0.642158	1.549084e-13	8.052291e-9	1.150327e-9
8	8118655	7904948	NM_001130111	FAM108A1	0.642158	1.549084e-13	8.052291e-9	1.006536e-9
9	8178264	7904869	NM_001130111	FAM108A1	0.642158	1.549084e-13	8.052291e-9	8.946991e-10
10	8179555	7904948	NM_001130111	FAM108A1	0.642158	1.549084e-13	8.052291e-9	8.052291e-10
11	8178264	7904948	NM_001130111	FAM108A1	0.642158	1.549084e-13	8.052291e-9	7.320265e-10
12	8179555	7904869	NM_001130111	FAM108A1	0.642158	1.549084e-13	8.052291e-9	6.710243e-10
13	8118655	8003467	NM_001083314	CHMP1A	0.633953	3.894541e-13	2.024421e-8	1.557247e-9
14	8178264	8003467	NM_001083314	CHMP1A	0.633953	3.894541e-13	2.024421e-8	1.446015e-9
15	8179555	8003467	NM_001083314	CHMP1A	0.633953	3.894541e-13	2.024421e-8	1.349614e-9
16	8118655	8074842	NM_001130111	FAM108A1	0.629812	6.137377e-13	3.190270e-8	1.993919e-9
17	8179555	8074842	NM_001130111	FAM108A1	0.629812	6.137377e-13	3.190270e-8	1.876629e-9
18	8178264	8074842	NM_001130111	FAM108A1	0.629812	6.137377e-13	3.190270e-8	1.772372e-9
19	8178264	7905664	NM_024330	SLC27A3	0.627175	8.171341e-13	4.247545e-8	2.235550e-9
20	8118655	7905664	NM_024330	SLC27A3	0.627175	8.171341e-13	4.247545e-8	2.123772e-9
21	8179555	7905664	NM_024330	SLC27A3	0.627175	8.171341e-13	4.247545e-8	2.022640e-9
22	8179555	8037144	NM_133328	DEDD2	0.622516	1.345829e-12	6.995755e-8	3.179888e-9
23	8118655	8037144	NM_133328	DEDD2	0.622516	1.345829e-12	6.995755e-8	3.041632e-9
24	8178264	8037144	NM_133328	DEDD2	0.622516	1.345829e-12	6.995755e-8	2.914898e-9
25	8118655	8087669	NM_006545	NPRL2	0.614206	3.211893e-12	1.669574e-7	6.678297e-9
26	8179555	8087669	NM_006545	NPRL2	0.614206	3.211893e-12	1.669574e-7	6.421440e-9
27	8178264	8087669	NM_006545	NPRL2	0.614206	3.211893e-12	1.669574e-7	6.183608e-9
28	8178264	7941879	NM_198517	TBC1D10C	0.613732	3.372699e-12	1.753162e-7	6.261294e-9
29	8118655	7941879	NM_198517	TBC1D10C	0.613732	3.372699e-12	1.753162e-7	6.045388e-9
30	8179555	7941879	NM_198517	TBC1D10C	0.613732	3.372699e-12	1.753162e-7	5.843875e-9
31	8178264	8063857	NM_015666	GTPBP5	0.612947	3.656122e-12	1.900489e-7	6.130609e-9
32	8179555	8063857	NM_015666	GTPBP5	0.612947	3.656122e-12	1.900489e-7	5.939027e-9
33	8118655	8063857	NM_015666	GTPBP5	0.612947	3.656122e-12	1.900489e-7	5.759057e-9
34	8179555	8019296	NM_016538	SIRT7	0.608432	5.791171e-12	3.010309e-7	8.853850e-9
35	8118655	8019296	NM_016538	SIRT7	0.608432	5.791171e-12	3.010309e-7	8.600882e-9
36	8178264	8019296	NM_016538	SIRT7	0.608432	5.791171e-12	3.010309e-7	8.361969e-9
37	8178264	7992388	NM_012225	NUBP2	0.605144	8.058840e-12	4.189066e-7	1.132180e-8
38	8118655	7992388	NM_012225	NUBP2	0.605144	8.058840e-12	4.189066e-7	1.102386e-8
39	8179555	7992388	NM_012225	NUBP2	0.605144	8.058840e-12	4.189066e-7	1.074119e-8
40	8118655	7949518	NM_198897	FIBP	0.604566	8.537293e-12	4.437770e-7	1.109443e-8
41	8178264	7949518	NM_198897	FIBP	0.604566	8.537293e-12	4.437770e-7	1.082383e-8
42	8179555	7949518	NM_198897	FIBP	0.604566	8.537293e-12	4.437770e-7	1.056612e-8
43	8118655	8073612	NM_000714	TSPO	0.602753	1.022396e-11	5.314515e-7	1.235934e-8
44	8179555	8073612	NM_000714	TSPO	0.602753	1.022396e-11	5.314515e-7	1.207844e-8
45	8178264	8073612	NM_000714	TSPO	0.602753	1.022396e-11	5.314515e-7	1.181003e-8
46	8179555	7907830	NM_002826	QSOX1	0.599956	1.347099e-11	7.002356e-7	1.522251e-8
47	8118655	7907830	NM_002826	QSOX1	0.599956	1.347099e-11	7.002356e-7	1.489863e-8
48	8178264	7907830	NM_002826	QSOX1	0.599956	1.347099e-11	7.002356e-7	1.458824e-8
49	8118655	7924230	NM_001130111	FAM108A1	0.598835	1.503380e-11	7.814717e-7	1.594840e-8
50	8179555	7924230	NM_001130111	FAM108A1	0.598835	1.503380e-11	7.814717e-7	1.562943e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation