[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3613	8060850	NM_001200	BMP2		bone morphogenetic protein 2

Fetching correlation data, please wait...
Getting list of correlations for id 3613.
Getting list of p-values for id 3613.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.134 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8060850	8049670	NM_002081	GPC1	0.776237	2.318497e-22	4.017259e-18	4.017259e-18
2	8060850	8086908	NM_001130082	PLXNB1	0.757351	8.886560e-21	1.539774e-16	7.698871e-17
3	8060850	7931643	NM_000773	CYP2E1	0.755043	1.356420e-20	2.350269e-16	7.834230e-17
4	8060850	8060604	NM_000915	OXT	0.754736	1.434214e-20	2.485062e-16	6.212656e-17
5	8060850	7991459	NM_020211	RGMA	0.751155	2.736133e-20	4.740898e-16	9.481797e-17
6	8060850	8004842	NM_173728	ARHGEF15	0.748248	4.585192e-20	7.944762e-16	1.324127e-16
7	8060850	8039520	NM_001101401	SBK2	0.747652	5.093225e-20	8.825030e-16	1.260719e-16
8	8060850	7937560	NM_002457	MUC2	0.744865	8.289273e-20	1.436282e-15	1.795353e-16
9	8060850	8110237	NM_133369	UNC5A	0.741930	1.375173e-19	2.382763e-15	2.647514e-16
10	8060850	8075118	NM_001887	CRYBB1	0.741589	1.457741e-19	2.525828e-15	2.525828e-16
11	8060850	7997264	NM_001906	CTRB1	0.740131	1.869200e-19	3.238763e-15	2.944330e-16
12	8060850	8059748	NM_004826	ECEL1	0.740075	1.886888e-19	3.269411e-15	2.724509e-16
13	8060850	7936111	NM_001129742	CALHM3	0.739254	2.168904e-19	3.758059e-15	2.890815e-16
14	8060850	8018754	NM_134268	CYGB	0.738247	2.570603e-19	4.454083e-15	3.181488e-16
15	8060850	8035639	NM_023002	HAPLN4	0.737624	2.854486e-19	4.945967e-15	3.297311e-16
16	8060850	7976755	NM_207117	SLC25A47	0.736592	3.393359e-19	5.879673e-15	3.674796e-16
17	8060850	8150928	NM_003580	NSMAF	-0.734355	4.923175e-19	8.530385e-15	5.017874e-16
18	8060850	8110382	NM_030567	PRR7	0.733762	5.429719e-19	9.408074e-15	5.226708e-16
19	8060850	7921773	NM_030916	PVRL4	0.732995	6.161637e-19	1.067627e-14	5.619089e-16
20	8060850	8089714	NM_002338	LSAMP	0.732951	6.206491e-19	1.075399e-14	5.376993e-16
21	8060850	7929932	NM_030929	KAZALD1	0.732635	6.536538e-19	1.132586e-14	5.393266e-16
22	8060850	8153101	NM_152888	COL22A1	0.731660	7.669293e-19	1.328858e-14	6.040265e-16
23	8060850	8078435	NM_001039111	TRIM71	0.730417	9.392178e-19	1.627383e-14	7.075577e-16
24	8060850	8027556	NM_002333	LRP3	0.728514	1.278182e-18	2.214707e-14	9.227944e-16
25	8060850	8159670	NM_006647	NOXA1	0.727793	1.435544e-18	2.487367e-14	9.949469e-16
26	8060850	7946860	NM_000352	ABCC8	0.727054	1.616113e-18	2.800238e-14	1.077015e-15
27	8060850	7929947	NM_005521	TLX1	0.727008	1.628067e-18	2.820953e-14	1.044797e-15
28	8060850	7998015	NM_032451	SPIRE2	0.726716	1.705940e-18	2.955883e-14	1.055672e-15
29	8060850	8049952	NM_173821	C2orf85	0.726298	1.823863e-18	3.160207e-14	1.089727e-15
30	8060850	8086183	NM_002078	GOLGA4	0.725650	2.022457e-18	3.504311e-14	1.168104e-15
31	8060850	8062527	NM_001018082	ADIG	0.725572	2.047564e-18	3.547814e-14	1.144456e-15
32	8060850	7901557	NM_033067	DMRTB1	0.725377	2.112073e-18	3.659589e-14	1.143621e-15
33	8060850	8039524	NM_152600	ZNF579	0.724632	2.377244e-18	4.119051e-14	1.248197e-15
34	8060850	8131096	NM_001128636	ELFN1	0.724536	2.413769e-18	4.182338e-14	1.230099e-15
35	8060850	8053728	NM_000798	DRD5	0.724188	2.550522e-18	4.419289e-14	1.262654e-15
36	8060850	8163599	NM_015404	DFNB31	0.723821	2.702680e-18	4.682934e-14	1.300815e-15
37	8060850	7933372	NM_004962	GDF10	0.723814	2.705675e-18	4.688123e-14	1.267060e-15
38	8060850	8062948	NM_014276	RBPJL	0.723637	2.782471e-18	4.821187e-14	1.268733e-15
39	8060850	8159036	NM_139025	ADAMTS13	0.723345	2.913823e-18	5.048781e-14	1.294559e-15
40	8060850	8110631	NM_152547	BTNL9	0.722242	3.465189e-18	6.004133e-14	1.501033e-15
41	8060850	7959234	NM_000545	HNF1A	0.721996	3.601405e-18	6.240155e-14	1.521989e-15
42	8060850	8039362	NM_178837	C19orf51	0.719817	5.059361e-18	8.766354e-14	2.087227e-15
43	8060850	7980152	NM_000428	LTBP2	0.719796	5.075690e-18	8.794649e-14	2.045267e-15
44	8060850	8013259	ENST00000300983		0.719369	5.422970e-18	9.396380e-14	2.135541e-15
45	8060850	7900001	NM_178548	TFAP2E	0.719126	5.630962e-18	9.756767e-14	2.168170e-15
46	8060850	7952893	BC024764	IQSEC3	0.718953	5.783562e-18	1.002118e-13	2.178517e-15
47	8060850	7977299	NM_001112726	KIAA0284	0.718718	5.997740e-18	1.039228e-13	2.211124e-15
48	8060850	7905020	NM_000798	DRD5	0.718486	6.215894e-18	1.077028e-13	2.243808e-15
49	8060850	8024373	NM_001039846	IZUMO4	0.718001	6.698737e-18	1.160690e-13	2.368756e-15
50	8060850	7937363	NM_007183	PKP3	0.717679	7.039187e-18	1.219680e-13	2.439360e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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